FMO08454.5prime Sequence
1134 bp (958 high quality bases) assembled on 2010-06-07
> FMO08454.5prime
CAGTCGACATGATGACGGGCACCGACGATAGTCCGTTGGTGGAGGAGGGC
GGTCCGAAAGCCAACCAGTACCGACTGACCATTTGGCACAAGGTCTCCAT
TTCCATGAACGAACCGGAAAACCTGAAACCACCTGCCAAATCCAACTTCC
GCCGTTATCTTCAGTGGATCCTAGCACCTGTCCTGACCGCCATTTCCGGT
CTGATCCTCTACTACCAAGGGCCTTGGTATGGAGTGGCCACGCTATATGC
CGCATTGATATCCATACTGCTGGTGCGTCCAGGATGGCGCTGGTTCTACA
TTGCAGCTGTTACCACACCCAGGGATACTGTAGCCCTCTTTGCCTACATC
CGTGTGCTGCTCTTCATTAAGCGCCAGGAGCGCAAGAACCTGAACATCGG
AGACATCTTTGAGTCAAATGTGGCCCGGCAGCCGGATAAACTGGCCATTG
TCAGTGAGTCCCAGCAGTGGACCTTCCGCCAGGTGAACGAGCATTCGAAC
CGGGTGGCCAACGTGTTCCACAGTCACGGCTACAAAAAGGGCGACGTGGT
GGGTCTGCTGCTCGAGAATCGCGCCGAATTTGTAGCCACCTGGCTTGGTC
TCTCCAAGATCGGCGTGATCACGCCGCTGATTAACACAAACCTCCGTGGA
GCCTCACTGCAGCACAGCATTACCGTGGGCCAGTGCACGGCGCTCATTTA
CGGCGCCAGTTTCCGGTCGGCCGTGATGGATATCGCCAAGGATCTGCCCG
CCCACGTCGGACTTTATCATTTCAACGACGAGTCCAACCAGGAGGTGGTG
GCTTCCGAGGGCCTTAGCCAGGGACTGGCCCAGCAGTTGAACGGCCTTCT
GGAGTCGGCGGCCAAGATAAGTGGCCGCCGGCGCTTCTCGGGCGGATCAT
CACGACAGTTGGTCTACATCCTACACGTCGGGCACCACGGGCTTGCCAAG
GCAGCGTCATCACGCATTCTCCGGTACTTTTTCATAGACTGCCGGCATTC
ACTACCCGCTTGCTTCAGGATCAGGATGTGTTCGTTAATTCCCTTGCCCC
TATATCCACCGCTGTGGAATGATGAGCATTGTGCCAAGCTTACTCTCGGC
TCCCACGTGGTCCATTAGGAAAAATTCACGCCTC
FMO08454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44252-RB | 2538 | CG44252-RB | 134..1267 | 8..1134 | 5000 | 97 | Plus |
CG44252-RD | 2651 | CG44252-RD | 330..1380 | 91..1134 | 4600 | 96.9 | Plus |
CG44252-RE | 2745 | CG44252-RE | 424..1474 | 91..1134 | 4600 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23059352..23059995 | 332..971 | 2880 | 98.6 | Plus |
2R | 25286936 | 2R | 23059053..23059293 | 91..331 | 1205 | 100 | Plus |
2L | 23513712 | 2L | 10513191..10513446 | 705..450 | 620 | 82.8 | Minus |
2R | 25286936 | 2R | 23058381..23058467 | 8..94 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:48 has no hits.
FMO08454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:19 Download gff for
FMO08454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30194-RB | 99..1175 | 8..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:15 Download gff for
FMO08454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44252-RB | 134..1210 | 8..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:41 Download gff for
FMO08454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44252-RB | 134..1210 | 8..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:41 Download gff for
FMO08454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23058381..23058465 | 8..92 | 98 | -> | Plus |
2R | 23059055..23059293 | 93..331 | 100 | -> | Plus |
2R | 23059352..23059996 | 332..973 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:15 Download gff for
FMO08454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18945904..18945988 | 8..92 | 98 | -> | Plus |
arm_2R | 18946578..18946816 | 93..331 | 100 | -> | Plus |
arm_2R | 18946875..18947519 | 332..973 | 98 | -> | Plus |