Clone FMO08454 Report

Search the DGRC for FMO08454

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:84
Well:54
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30194-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08454.5prime Sequence

1134 bp (958 high quality bases) assembled on 2010-06-07

> FMO08454.5prime
CAGTCGACATGATGACGGGCACCGACGATAGTCCGTTGGTGGAGGAGGGC
GGTCCGAAAGCCAACCAGTACCGACTGACCATTTGGCACAAGGTCTCCAT
TTCCATGAACGAACCGGAAAACCTGAAACCACCTGCCAAATCCAACTTCC
GCCGTTATCTTCAGTGGATCCTAGCACCTGTCCTGACCGCCATTTCCGGT
CTGATCCTCTACTACCAAGGGCCTTGGTATGGAGTGGCCACGCTATATGC
CGCATTGATATCCATACTGCTGGTGCGTCCAGGATGGCGCTGGTTCTACA
TTGCAGCTGTTACCACACCCAGGGATACTGTAGCCCTCTTTGCCTACATC
CGTGTGCTGCTCTTCATTAAGCGCCAGGAGCGCAAGAACCTGAACATCGG
AGACATCTTTGAGTCAAATGTGGCCCGGCAGCCGGATAAACTGGCCATTG
TCAGTGAGTCCCAGCAGTGGACCTTCCGCCAGGTGAACGAGCATTCGAAC
CGGGTGGCCAACGTGTTCCACAGTCACGGCTACAAAAAGGGCGACGTGGT
GGGTCTGCTGCTCGAGAATCGCGCCGAATTTGTAGCCACCTGGCTTGGTC
TCTCCAAGATCGGCGTGATCACGCCGCTGATTAACACAAACCTCCGTGGA
GCCTCACTGCAGCACAGCATTACCGTGGGCCAGTGCACGGCGCTCATTTA
CGGCGCCAGTTTCCGGTCGGCCGTGATGGATATCGCCAAGGATCTGCCCG
CCCACGTCGGACTTTATCATTTCAACGACGAGTCCAACCAGGAGGTGGTG
GCTTCCGAGGGCCTTAGCCAGGGACTGGCCCAGCAGTTGAACGGCCTTCT
GGAGTCGGCGGCCAAGATAAGTGGCCGCCGGCGCTTCTCGGGCGGATCAT
CACGACAGTTGGTCTACATCCTACACGTCGGGCACCACGGGCTTGCCAAG
GCAGCGTCATCACGCATTCTCCGGTACTTTTTCATAGACTGCCGGCATTC
ACTACCCGCTTGCTTCAGGATCAGGATGTGTTCGTTAATTCCCTTGCCCC
TATATCCACCGCTGTGGAATGATGAGCATTGTGCCAAGCTTACTCTCGGC
TCCCACGTGGTCCATTAGGAAAAATTCACGCCTC

FMO08454.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG44252-RB 2538 CG44252-RB 134..1267 8..1134 5000 97 Plus
CG44252-RD 2651 CG44252-RD 330..1380 91..1134 4600 96.9 Plus
CG44252-RE 2745 CG44252-RE 424..1474 91..1134 4600 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23059352..23059995 332..971 2880 98.6 Plus
2R 25286936 2R 23059053..23059293 91..331 1205 100 Plus
2L 23513712 2L 10513191..10513446 705..450 620 82.8 Minus
2R 25286936 2R 23058381..23058467 8..94 420 98.9 Plus
Blast to na_te.dros performed on 2014-11-28 22:16:48 has no hits.

FMO08454.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:19 Download gff for FMO08454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30194-RB 99..1175 8..1079 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:15 Download gff for FMO08454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44252-RB 134..1210 8..1079 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:41 Download gff for FMO08454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44252-RB 134..1210 8..1079 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:41 Download gff for FMO08454.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23058381..23058465 8..92 98 -> Plus
2R 23059055..23059293 93..331 100 -> Plus
2R 23059352..23059996 332..973 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:15 Download gff for FMO08454.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18945904..18945988 8..92 98 -> Plus
arm_2R 18946578..18946816 93..331 100 -> Plus
arm_2R 18946875..18947519 332..973 98 -> Plus