FMO08455.5prime Sequence
1167 bp (1043 high quality bases) assembled on 2010-06-07
> FMO08455.5prime
CAGTCGACATGAGCAGCAACAACAACGCACCCGCATCGGCTCCAGACACG
GGCTCCACCAATGCCAACGATCCCATCTCCGGTTCGCTGTCCGTAGACAG
CAACCTGGTTATCATTCAGGACATGATTGATCTCTCGGCCAACCATCTGG
AGGGCCTGCGAACGCAGTGCGCGATCAGCTCCACGCTGACGCAGCAGGAG
ATTCGTTGCCTGGAGTCGAAGCTGGTGCGATACTTCTCCGAGCTGCTGCT
GGCGAAGATGCGGCTAAATGAGCGCATCCCGGCCAACGGGCTTGTGCCCC
ACACAACGGGCAACGAACTGAGGCAATGGCTGCGCGTAGTGGGCCTTAGC
CAGGGGACTCTTACCGCCTGCCTTGCTCGCCTGACCACTCTAGAGCAAAG
CCTGCGTCTCAGCGACGAGGAGATCCGTCAACTCCTGGCTGACAGCCCCA
GCCAGCGAGAGGAGGAGGAACTGCGACGCCTGACCAGGGCCATGCAGAAC
TTAAGGAAGTGCATGGAGTCGCTGGAGAGCGGTACTGCGGCTAGCAACAA
CGATCCAGAGCAGTGGCACTGGGACTCCTGGGACAGGCCCACCCACATTC
ATCGCGGCAGTGTGGGAAACATTGGACTGGGTAACAATTCAACCGCCTCC
CCGAGAACCCATCATCGCCAGCATGGTGTCAAGGGAAAGAATTCCGCTCT
GGCCAACTCCACCAACTTCAAAAGTGGCCGCCAATCGCCCTCAGCGACAG
AAGAGCTGAACAGCACACAGGGTTCCCAGCTGACTTTAACCCTTACGCCC
TCGCCACCCAATTCGCCCTTCACGCCTTCCAGTGGGCTGAGCAGCAGCCT
TAATGGAACACCACAGAGGAGTCGTGGACCCCGCCGCCAGCTAGAAGCAC
CAGACCTTGCTGAGCAGAGTCATGTGCAAGTGACGGGGAGCAATTAGCCC
GCAACCGTTTGCCCACTGATCCCAGCCCGAAAGCCACAGCTCCACCAGCT
CGGACTCTTGTGGACCCAAATACTAATGCCAGCTCGGAGGAAGTCCTCGA
CGTGCTTATGGGTGCCATGCTTCTCCGGGCGGGGGTCACGTGGGCATGGT
CATGCAATCAAGCATCGATTCACAAGGCCTGGCTTCATGGCCACTGTTAC
CTGGCCAGCAGTTTCAC
FMO08455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ksr-RD | 3354 | CG2899-RD | 270..1417 | 9..1144 | 5305 | 98.3 | Plus |
| ksr-RC | 5517 | CG2899-RC | 270..1417 | 9..1144 | 5305 | 98.3 | Plus |
| ksr-RB | 4559 | CG2899-RB | 270..1417 | 9..1144 | 5305 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5482514..5483637 | 1123..9 | 4940 | 98.4 | Minus |
Blast to na_te.dros performed 2014-11-28 19:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 257..308 | 1079..1028 | 125 | 71.2 | Minus |
FMO08455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:18 Download gff for
FMO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ksr-RA | 245..1415 | 1..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:58 Download gff for
FMO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ksr-RA | 266..1436 | 1..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:31 Download gff for
FMO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ksr-RB | 266..1436 | 1..1161 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:31 Download gff for
FMO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5482471..5483641 | 1..1161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:58 Download gff for
FMO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1308193..1309363 | 1..1161 | 97 | | Minus |
