FMO08456.5prime Sequence
1148 bp (1034 high quality bases) assembled on 2010-06-07
> FMO08456.5prime
CAGTCGACATGAGTGCAAAATTGCCATGGCAACGTGAATCGAACACGAAC
AGCAACACCCACACAGAGACCATTGAAGATCCGCGCATTGTGGCGCAGTA
TTGCATCAGCAACTGCCAACACATTATGGAGTCCTTCCTGAGTCTCTTTG
ATCCCAATCAGGACGACGGCTTCGAGGAAGAGCCCGAGCTCAATGGCAAC
AGCAGCGGCGGCGGAAGCAGCAGCAGCGACTATGAGACGGACGCCAATGC
CAACGAGTGCAGCGTAGTGAGCGGGATGCCCACCGAGCGGGGCAACCTGA
TCTTCGACTTCGAGCAGGGAATGCTGCCACCAGAGCCGCAGCTCGGAAAT
GTGGAGTACAAGCTGAAGCTGGTCAACCCGTCGAAGCAGCGATTCGAGCA
CCTGGTGACCCAGATGAAGTGGCGTCTGCGCGAGGGAAACGGCGAGGCCA
TCTACGAGATTGGAGTATCCGACGCCGGCTATCTGCAGGGACTCAGCGAC
AAGGACATGAATGCCTCGCTCACCACGCTCAAGCAGATGGCCCACAGCCT
AGGAGCCAGTACCTCAGTGCTGCGGCGAAAGACCATCGCCGCCCGACGCG
CCGTCGCCGAGGTACTGGTCCGTAAGATCCCCGACGACCAGCACAACATC
GAGGTTCGGGTGGCGGTGCTCGGCGGAGCTGATGCAGGCAAATCCACTTT
GCTGGGCGTGCTTACACAGGACGAGCTGGATAACGGACACGGCCGGGCGC
GGCTCAATATGTTTAGGCACATGCACGAGATTCAGTCTGGCCGCACCTCC
TGCATCTCCCACGAGACGCTTGGCTTCGATGCACTGGGTAATGTGGTCAA
CTACAAGTACAATGAGATGATGACGGCAGAGGAGATTAGCGACAGGTCCA
GCAGCTGGTTACCTTCATGGATCTAGCCGGACACGACGCTACATGCGCAC
ACCGTGCAGCACTGAGTGATACTCACCCCACTACGCCATGCTGGTGGTAT
CGGCGGGCAGCGGTTGCAACGACACCACCGAGGAGCACTTGGCTATCGTG
GCGGGCACTGGACATGCCCTTCTTTGTATGTCACGAAGAACGATATACAT
CCGCCGGACGCGAACGGTACGGGAGTGGGGCAACTTGTCTCACACACA
FMO08456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-RA | 2289 | CG2017-RA | 127..1267 | 7..1143 | 5345 | 98.4 | Plus |
| CG2017-RE | 2144 | CG2017-RE | 92..1122 | 117..1143 | 4795 | 98.3 | Plus |
| CG2017-RB | 2368 | CG2017-RB | 316..1346 | 117..1143 | 4795 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5859731..5860404 | 790..117 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 5859171..5859521 | 1134..789 | 1200 | 94.6 | Minus |
| 3R | 32079331 | 3R | 5862170..5862279 | 116..7 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:18:25 has no hits.
FMO08456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:13 Download gff for
FMO08456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 127..1268 | 1..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:31 Download gff for
FMO08456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 121..1262 | 1..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:33 Download gff for
FMO08456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 121..1262 | 1..1137 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:33 Download gff for
FMO08456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5859168..5859520 | 790..1137 | 95 | <- | Minus |
| 3R | 5859732..5860404 | 117..789 | 100 | <- | Minus |
| 3R | 5862170..5862281 | 1..116 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:31 Download gff for
FMO08456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1684890..1685242 | 790..1137 | 95 | <- | Minus |
| arm_3R | 1685454..1686126 | 117..789 | 100 | <- | Minus |
| arm_3R | 1687892..1688003 | 1..116 | 96 | | Minus |
