FMO08458.5prime Sequence
1094 bp (995 high quality bases) assembled on 2010-06-07
> FMO08458.5prime
CAGTCGACATGAATATTGTCGGGGAATATGAATACAGCTCCAAGGATATG
CTGGGCCATGGCGCCTTTGCCGTCGTCTACAAAGGACGTCATCGCAAGAA
ACACATGCCGGTGGCCATCAAGTGCATCACGAAGAAGGGACAACTGAAGA
CGCAGAATCTGCTCGGCAAGGAGATCAAGATCCTGAAGGAGCTCACCGAG
CTGCACCATGAGAATGTGGTGGCTCTGCTGGACTGCAAGGAGTCCCAGGA
TTGCGTCAGCCTGGTCATGGAGTATTGCAATGGCGGCGACTTGGCGGATT
ATCTGAGTGTCAAGGGGACGCTCAGCGAGGATACCGTTAGACTCTTCCTC
GTGCAACTAGCTGGTGCTATGAAAGCACTTTATACCAAAGGAATTGTGCA
TCGTGATCTCAAGCCACAAAACATTTTGCTATCGCACAATTATGGCAAAA
CATTGCCAGCTCCATCGAAAATAACCCTGAAAATTGCGGATTTTGGGTTT
GCGCGATTCCTGAACGAGGGCGCCATGGCAGCCACTCTGTGCGGCTCTCC
CATGTATATGGCGCCCGAGGTGATCATGTCGCTGCAGTACGACTCCAAGG
CGGATCTCTGGTCGCTGGGAACGATTGTCTACCAGTGTTTGACTGGCAAG
GCGCCATTCTATGCACAAACGCCCAACGAACTGAAGTCCTACTACGAGCA
GAATGCTAACCTGGCACCAAAAATTCCAAGTGGCGTGTCACCGGATCTGA
GGGATCTGCTGCTGTGCCTGCTGCGCCGCAACTCCAAGGATCGCATCTCG
TACGAGAGCTTCTTTGTTCACCGCTTCCTTCAGGCAAGAAGCGGCCGTGT
CGCCAGTTGACATGCCACCGCTTGCGGACACCACCTGCCAAGGCCAAGAG
CCCTTGCAGCAGCAGCTGGAGCAGACTGAAGCTGGTCAGCTGGCCGAGCA
CAGCAGATGAGCGCGAGAGCAGAGCCCAGAGACGAGACACGTGTCGTGTG
CATCGCATTGTGCACATCACACGTAGTGTCTGTGCGACATGAAACACAGC
GATCCTGCAGCTCCCACGAGACTCGATGACTTGGCTGTGCAAGA
FMO08458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg1-RA | 4088 | CG10967-RA | 673..1784 | 9..1082 | 4605 | 96.3 | Plus |
Atg1-RB | 3446 | CG10967-RB | 673..1526 | 9..860 | 4205 | 99.6 | Plus |
Atg1-RB | 3446 | CG10967-RB | 1579..1844 | 853..1082 | 425 | 85.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12797683..12797858 | 272..97 | 880 | 100 | Minus |
3L | 28110227 | 3L | 12787793..12787954 | 721..560 | 810 | 100 | Minus |
3L | 28110227 | 3L | 12788249..12788378 | 486..357 | 650 | 100 | Minus |
3L | 28110227 | 3L | 12787593..12787733 | 860..722 | 590 | 97.9 | Minus |
3L | 28110227 | 3L | 12788541..12788630 | 360..271 | 450 | 100 | Minus |
3L | 28110227 | 3L | 12804355..12804444 | 98..9 | 450 | 100 | Minus |
3L | 28110227 | 3L | 12788015..12788090 | 561..486 | 380 | 100 | Minus |
3L | 28110227 | 3L | 12787437..12787540 | 950..853 | 260 | 92.3 | Minus |
Blast to na_te.dros performed 2014-11-28 20:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 672..750 | 747..824 | 113 | 62 | Plus |
FMO08458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:33 Download gff for
FMO08458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg1-RA | 665..1645 | 1..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:33 Download gff for
FMO08458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg1-RA | 667..1647 | 1..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:27 Download gff for
FMO08458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg1-RA | 667..1647 | 1..972 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:27 Download gff for
FMO08458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12797683..12797856 | 99..272 | 100 | <- | Minus |
3L | 12804355..12804450 | 1..98 | 95 | | Minus |
3L | 12788249..12788374 | 361..486 | 100 | <- | Minus |
3L | 12788541..12788628 | 273..360 | 100 | <- | Minus |
3L | 12787437..12787536 | 857..950 | 94 | <- | Minus |
3L | 12787597..12787733 | 722..856 | 98 | <- | Minus |
3L | 12787793..12787953 | 561..721 | 100 | <- | Minus |
3L | 12788016..12788089 | 487..560 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:33 Download gff for
FMO08458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12780537..12780636 | 857..950 | 94 | <- | Minus |
arm_3L | 12781349..12781474 | 361..486 | 100 | <- | Minus |
arm_3L | 12780697..12780833 | 722..856 | 98 | <- | Minus |
arm_3L | 12781641..12781728 | 273..360 | 100 | <- | Minus |
arm_3L | 12780893..12781053 | 561..721 | 100 | <- | Minus |
arm_3L | 12781116..12781189 | 487..560 | 100 | <- | Minus |
arm_3L | 12790783..12790956 | 99..272 | 100 | <- | Minus |
arm_3L | 12797455..12797550 | 1..98 | 95 | | Minus |