Clone FMO08458 Report

Search the DGRC for FMO08458

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:84
Well:58
Vector:pMK33-CFH-BD
Associated Gene/TranscriptAtg1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08458.5prime Sequence

1094 bp (995 high quality bases) assembled on 2010-06-07

> FMO08458.5prime
CAGTCGACATGAATATTGTCGGGGAATATGAATACAGCTCCAAGGATATG
CTGGGCCATGGCGCCTTTGCCGTCGTCTACAAAGGACGTCATCGCAAGAA
ACACATGCCGGTGGCCATCAAGTGCATCACGAAGAAGGGACAACTGAAGA
CGCAGAATCTGCTCGGCAAGGAGATCAAGATCCTGAAGGAGCTCACCGAG
CTGCACCATGAGAATGTGGTGGCTCTGCTGGACTGCAAGGAGTCCCAGGA
TTGCGTCAGCCTGGTCATGGAGTATTGCAATGGCGGCGACTTGGCGGATT
ATCTGAGTGTCAAGGGGACGCTCAGCGAGGATACCGTTAGACTCTTCCTC
GTGCAACTAGCTGGTGCTATGAAAGCACTTTATACCAAAGGAATTGTGCA
TCGTGATCTCAAGCCACAAAACATTTTGCTATCGCACAATTATGGCAAAA
CATTGCCAGCTCCATCGAAAATAACCCTGAAAATTGCGGATTTTGGGTTT
GCGCGATTCCTGAACGAGGGCGCCATGGCAGCCACTCTGTGCGGCTCTCC
CATGTATATGGCGCCCGAGGTGATCATGTCGCTGCAGTACGACTCCAAGG
CGGATCTCTGGTCGCTGGGAACGATTGTCTACCAGTGTTTGACTGGCAAG
GCGCCATTCTATGCACAAACGCCCAACGAACTGAAGTCCTACTACGAGCA
GAATGCTAACCTGGCACCAAAAATTCCAAGTGGCGTGTCACCGGATCTGA
GGGATCTGCTGCTGTGCCTGCTGCGCCGCAACTCCAAGGATCGCATCTCG
TACGAGAGCTTCTTTGTTCACCGCTTCCTTCAGGCAAGAAGCGGCCGTGT
CGCCAGTTGACATGCCACCGCTTGCGGACACCACCTGCCAAGGCCAAGAG
CCCTTGCAGCAGCAGCTGGAGCAGACTGAAGCTGGTCAGCTGGCCGAGCA
CAGCAGATGAGCGCGAGAGCAGAGCCCAGAGACGAGACACGTGTCGTGTG
CATCGCATTGTGCACATCACACGTAGTGTCTGTGCGACATGAAACACAGC
GATCCTGCAGCTCCCACGAGACTCGATGACTTGGCTGTGCAAGA

FMO08458.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Atg1-RA 4088 CG10967-RA 673..1784 9..1082 4605 96.3 Plus
Atg1-RB 3446 CG10967-RB 673..1526 9..860 4205 99.6 Plus
Atg1-RB 3446 CG10967-RB 1579..1844 853..1082 425 85.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12797683..12797858 272..97 880 100 Minus
3L 28110227 3L 12787793..12787954 721..560 810 100 Minus
3L 28110227 3L 12788249..12788378 486..357 650 100 Minus
3L 28110227 3L 12787593..12787733 860..722 590 97.9 Minus
3L 28110227 3L 12788541..12788630 360..271 450 100 Minus
3L 28110227 3L 12804355..12804444 98..9 450 100 Minus
3L 28110227 3L 12788015..12788090 561..486 380 100 Minus
3L 28110227 3L 12787437..12787540 950..853 260 92.3 Minus
Blast to na_te.dros performed 2014-11-28 20:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 672..750 747..824 113 62 Plus

FMO08458.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:33 Download gff for FMO08458.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg1-RA 665..1645 1..972 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:33 Download gff for FMO08458.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg1-RA 667..1647 1..972 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:27 Download gff for FMO08458.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg1-RA 667..1647 1..972 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:27 Download gff for FMO08458.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12797683..12797856 99..272 100 <- Minus
3L 12804355..12804450 1..98 95   Minus
3L 12788249..12788374 361..486 100 <- Minus
3L 12788541..12788628 273..360 100 <- Minus
3L 12787437..12787536 857..950 94 <- Minus
3L 12787597..12787733 722..856 98 <- Minus
3L 12787793..12787953 561..721 100 <- Minus
3L 12788016..12788089 487..560 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:33 Download gff for FMO08458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12780537..12780636 857..950 94 <- Minus
arm_3L 12781349..12781474 361..486 100 <- Minus
arm_3L 12780697..12780833 722..856 98 <- Minus
arm_3L 12781641..12781728 273..360 100 <- Minus
arm_3L 12780893..12781053 561..721 100 <- Minus
arm_3L 12781116..12781189 487..560 100 <- Minus
arm_3L 12790783..12790956 99..272 100 <- Minus
arm_3L 12797455..12797550 1..98 95   Minus