FMO08459.5prime Sequence
1153 bp (1032 high quality bases) assembled on 2010-06-07
> FMO08459.5prime
CAGTCGACATGGATAGTTTAATTACAATTGTTAACAAGCTGCAAGATGCG
TTCACATCGCTCGGCGTCCACATGCAACTGGATCTGCCGCAGATCGCGGT
GGTCGGTGGCCAGTCAGCTGGCAAGAGTTCCGTTTTGGAGAACTTTGTGG
GCAAAGATTTCTTGCCGCGCGGCTCTGGTATCGTAACTCGGAGACCACTA
ATCTTGCAACTGATCAATGGAGTTACCGAATATGGCGAGTTCCTTCACAT
TAAAGGCAAGAAGTTTTCCAGCTTCGATGAGATCAGAAAAGAAATCGAAG
ATGAAACGGATCGTGTGACCGGTAGTAACAAAGGCATTTCAAACATTCCA
ATTAATTTGCGCGTCTACTCGCCGCACGTACTCAATTTAACCCTGATCGA
TTTGCCAGGCCTGACAAAGGTGGCCATTGGCGATCAACCGGTGGATATTG
AGCAGCAAATTAAGCAGATGATATTCCAATTTATTCGCAAAGAGACTTGT
TTAATTTTGGCTGTGACCCCGGCCAATACGGATCTGGCCAATTCGGATGC
CCTCAAGCTGGCCAAGGAGGTGGATCCACAGGGTGTGCGAACCATTGGCG
TTATAACCAAGCTGGATCTGATGGACGAGGGCACCGATGCACGCGACATT
CTGGAGAATAAGCTGCTTCCGCTGCGACGTGGCTATATTGGCGTGGTGAA
TAGATCCCAAAAGGATATCGAGGGGCGCAAGGATATCCACCAGGCATTGG
CCGCCGAACGCAAGTTCTTCTTGAGCCATCCCTCCTATCGGCACATGGCC
GACCGTCTCGGCACCCCCTACTTGCAGCGCGTGCTCAACCAACAACTAAC
CAATCACATCAGGACACGTTACCTGGCCCTGCGGGATAGTTGCAGAAGCA
GATGCTCACTTTGGAGAAGAGTGAGAGTTTAGCACTTTCAGCCAGGCGAT
GCTAGCATCAAACAAAGCTATGCTCCAAATGATTCAGCAGCTGCATCAGA
CTTTGAGCGACCTATCGAGGCAGCGCTCAGCTTTGATGACCACAACGAGC
TCCCCAGTGCGCCAAGATCATCGCATTTCCCATGAACGCCTGCCCTTGGA
TCGTAAGAATGGCTTGCCATGAAGGAACTGCACGAGAGATCCATTGCAAT
CGA
FMO08459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shi-RO | 4768 | CG18102-RO | 396..1558 | 9..1150 | 5075 | 97 | Plus |
| shi-RN | 3712 | CG18102-RN | 230..1392 | 9..1150 | 5075 | 97 | Plus |
| shi-RM | 4198 | CG18102-RM | 419..1581 | 9..1150 | 5075 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15894834..15895591 | 228..977 | 3360 | 98 | Plus |
| X | 23542271 | X | 15893005..15893150 | 9..154 | 730 | 100 | Plus |
| X | 23542271 | X | 15894693..15894766 | 155..228 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:37:30 has no hits.
FMO08459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:32 Download gff for
FMO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shi-RB | 383..1520 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:23 Download gff for
FMO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shi-RM | 410..1547 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:09 Download gff for
FMO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shi-RM | 412..1549 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:09 Download gff for
FMO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15892998..15893150 | 1..154 | 97 | -> | Plus |
| X | 15894693..15894766 | 155..228 | 100 | -> | Plus |
| X | 15894835..15895591 | 229..977 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:23 Download gff for
FMO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15787031..15787183 | 1..154 | 97 | -> | Plus |
| arm_X | 15788726..15788799 | 155..228 | 100 | -> | Plus |
| arm_X | 15788868..15789624 | 229..977 | 98 | -> | Plus |
