FMO08460.5prime Sequence
1113 bp (1000 high quality bases) assembled on 2010-06-07
> FMO08460.5prime
CAGTCGACATGGACGACGAGTTTAAGCTGTGCTGGAAGAACTTCCAGGAC
AACATAGCCAGCGGCTTCCAGAATTTGTACGACCGCGGCGACCTGGTGGA
CGTGACCCTCGCCTGCGATGGAAAGCTCCTCCATGCCCACAAGATAGTGC
TGGCTATCTGCAGCCCCTACTTCCAGGAGATATTCACTACCAATCCCTGC
AAGCATCCCATCATAATACTCAAGGATGTGAGTTTCAACATTATGATGGA
GCTACTGGAGTTTATGTACCAAGGAGTGGTTAATGTTAAGCACACGGAGT
TGCAGTCGTTCATGAAAATTGGACAGCTGCTGCAGATCAAGGGCTTGGCT
ACCAATTCGAATTCCTCGCCAGGATCGAGTGTCTCGGAGAAGTCCTCTAG
TCAGCCACCGGCAGAAGAATCAAGCAACACCAACAGCACCAATCATCACA
ACTCTAGCACTAATAGCAATAACAATAGCAAATCGGAAACGGATCACAAT
GAGTCCAAAGGCCAGAGCAATTCAAGAACCACTTCGCCAGGTGGTGCCAG
CAGAGCCTCCAACGATGCCAGCCACCTGTACACATCGAACAAACGTCCGA
TGCCGTCGGATTTTGGCAGCGATTCCCTGTCCATTTACTCCGGCAAGCAG
TTGAGACGCTCCCTCAAGGATCACGGTTCCGGCGGAAGCGAAGGCGGCGG
AGGCGATCACGCGGATACCGCAGCCGGATTGGACAACAGCATGAATTCAG
AGGAGTTCTTCTTGCCACCCATTCCACAAATCACGATGGGAGAACAGCGC
TACGATCTCGGAGGTCTGAAACGGGAATCGGATGGTCACCACCACGGTCC
CTTGTCGGCTGGCGGAGGAAATTCGGGCAGCGTTGGCAGCCTCACCTCCT
CGGCCTCACCGTCTGCACCCATCCGTAATCCCTTTGCCCCGAACTTCATG
GACAGCTTCAACTACTACAAGGCGGCAACAGCAGTGTCCCAGCGTTAGTT
CCATTAACTTCGGTTGGCCAGTGCGTCATAACTATTGCCTCCGTGGGCCT
TTGCTCCGGCGCGAGTAACCCACGACTGTATATGGCCAACGATTACTTCA
TGAGCTTGCCACT
FMO08460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34376-RB | 2357 | CG34376-RB | 318..1423 | 9..1107 | 5130 | 98.2 | Plus |
| CG34376-RA | 2550 | CG34376-RA | 318..1423 | 9..1107 | 5130 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22456551..22457451 | 214..1107 | 3910 | 96.9 | Plus |
| 3R | 32079331 | 3R | 22448416..22448620 | 9..213 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:28 has no hits.
FMO08460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:31 Download gff for
FMO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34376-RB | 369..1487 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:34 Download gff for
FMO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34376-RA | 310..1428 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:28 Download gff for
FMO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34376-RA | 310..1428 | 1..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:28 Download gff for
FMO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22448408..22448620 | 1..213 | 98 | -> | Plus |
| 3R | 22456551..22457456 | 214..1113 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:34 Download gff for
FMO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18274130..18274342 | 1..213 | 98 | -> | Plus |
| arm_3R | 18282273..18283178 | 214..1113 | 97 | | Plus |
