FMO08461.5prime Sequence
1084 bp (982 high quality bases) assembled on 2010-06-07
> FMO08461.5prime
CAGTCGACATGTTTAGTCCTATAAAAAAAATATTTACGTACATACAAAAA
AATGCGAGCGGCTCCAATATGTTTAGCCCATCAGGAAACAAGGCCGCCGG
CCAAAGGGAGGGGACCACCAGCCTAACTGCCCACGACGAAGGCGAAAGGA
AGGATCAGCGGCATCTGGATCACAAGGATAATCAGAGCGAACCGGAGGAG
CGGCAGCATCAGCTGCAAATATTTCCCCACCTGGACGATGACGACGACGA
CATCGAGAGGCAGATCAAAACCTCCATAATTGACGCCAGCAAGGTGCACG
CAGCGAAAGCCAAGGCGTTGGCTTCCCTACCCATGCCGCTTGAGCAGCTC
GATGATGAACTGGCGGACTTTGCTCACGGCCCGGCGGACACCGAACTAGA
GGAGCAGTTCCTTGAGCTGGAGAACTATCCTAATAATGAGATAATCGTAC
TAGGCGATGCGGATCTTAACTCTTCAATAGCTTCCGACGCAGTCTCCGAG
GACCCACTGGCAATTGACAACATTCTTGACTCCGCGTCGGTCACCACAAA
CGAGGAGGTCGACACCAGTGGAGAACTTCTTTGGCTGAAGTTGAACAATG
AGACGGAAATGGCCACCAGATCAGCGGAGGTGGTGTCCAACAACCAAGCA
TCATTGGAGCCTGCCCAGCCAGCCAAACCGAAAGAGGATGAGCTTAGAGA
TGGTGGGTCTGATTCTGGTTTAGGAAGTGAAACCTCCGCGTTACTCAAGG
ATCAGGCGGAGAAAGAAGCCGAGCCGGAAATCCAGAAAAAGGTGGAAACG
AAGCCCATAAAGTCCAACCTTAAACGGAGACTCGAAGATTCGGTAAGCGA
TGCTATAGATCTGGTGCCCGACATGTCTGCCCCTCCAGTAGCCCCCCAGA
AGCGGACTAAGCGCTCCATCACTTTGACGAGGTGAAGTGTTCTACTTCCC
ACGTACACAGGCTTCAGTTGTGTACACGGCGGGCGGATGCACTTGGCATG
GGTGCAGCATGTAGTTTTAGAACGATGACCTGGCCGAGCACGCACGGATG
AGCGGCCCATCCCAACAGAACCAGAACTCCAGCC
FMO08461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-RD | 3896 | CG4272-RD | 181..1275 | 8..1084 | 4905 | 97.5 | Plus |
| Axud1-RC | 4318 | CG4272-RC | 603..1697 | 8..1084 | 4905 | 97.5 | Plus |
| Axud1-RA | 4145 | CG4272-RA | 430..1524 | 8..1084 | 4905 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2366320..2367367 | 8..1044 | 4675 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:02 has no hits.
FMO08461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:06 Download gff for
FMO08461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-RB | 83..1148 | 1..1052 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:24 Download gff for
FMO08461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 423..1488 | 1..1052 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:14 Download gff for
FMO08461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 423..1488 | 1..1052 | 97 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:14 Download gff for
FMO08461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2366313..2367378 | 1..1052 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:24 Download gff for
FMO08461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2366313..2367378 | 1..1052 | 97 | -> | Plus |
