FMO08462.5prime Sequence
1137 bp (891 high quality bases) assembled on 2010-06-07
> FMO08462.5prime
CAGTCGACATGAATATAATTTCGCGCAGCATACGTACAGGCGCCTTGGCC
CCGCCCATCACTGCCCACGCCTCCGCCAACGCCAACGCCAGCGGGCTCAG
GAAAAGCAGCCAGCGACGCAACCGTGCTCCGCTTCAAATGAATTGCCCCA
TTCTGATTGTAATTAGCCTCGGATGGCTGCTGCACGCGCACGCCGGAAGC
GGCGGGTTCGCCGTCGAGGCCGCCATTTCAAATCGAGGCAGCAACAGCCG
CTCGATGAGCAACGTGCAACAGTCGGCGGTGGCCGCCTCCACGCTGACCG
CCACCCTGCCCCGTTTCCTCTCCAGAGGACACACCTACCGCGCCGTCGTC
GGGGACACGCTGGTCCTGCCCTGCCAGGTGGAGAATCTGGGCAATTTCGT
CCTTCTGTGGCGACGGGGAACAAATGTGCTCACTGCCTCCAACATTATGG
TTACAAGGGATGAGCGCGTAAGACTGATAGATGGTTATAATTTAGAGATA
TCCGATTTGGAGCCTCAAGACGCCGGGGATTATGTTTGTCAAATCAGTGA
CAAAATAAATCGTGATCAAGTGCACACAGTTGAGATATTGGTTCCGCCCA
GTGTACGGGCCATCCCAACATCCGGACAACTGCAGGCCCGCAAAGGAGGA
CCCATTACGTTGGAGTGCAAGGGATCTGGTATTCCGGTGCCATCCATTTA
CTGGACCAAGAAGAGCGGCGCAAACAAGTCAACGGCCAGGATCGGAGACG
GACCCATTTTTGACACTGGAGAAGCTGGAGCGACGGCAGGCGGGAGTCTA
CCAGTGCACCGCCGACAACGGAGTGGGTGACCCGGTCAAGTGGATATGCG
ACTGGATGTGTTGTATCCCCCGGATATACAAGTGGAGAAATCTGGATCAC
TCGGGCGAAGGATCCGAGGCGAAGCTCGTTTGCATTGTTTTCCGCTGATC
CATTCGCACCGGTGTCCTGGTAACAAAACTCATTTTCGATCCATTGACGT
GAAAGGCGCATCATGGGCCACCCAAGGCAACCGGGCATTGCTTCACATTC
GCCTATTCAGCAAGGAAGGATCTATGGGAAATAACGCTGGCTGTGGCGGG
AAATTCGTGGGGACGGGCCCGCTATAATACATGGGGA
FMO08462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klg-RA | 4052 | CG6669-RA | 785..1904 | 9..1134 | 4775 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22915408..22915637 | 9..238 | 1150 | 100 | Plus |
| 3R | 32079331 | 3R | 22953000..22953201 | 390..591 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 22948675..22948830 | 236..391 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 22955750..22955902 | 712..864 | 655 | 98.1 | Plus |
| 3R | 32079331 | 3R | 22953346..22953468 | 591..713 | 600 | 99.2 | Plus |
| 3R | 32079331 | 3R | 22956590..22956689 | 865..963 | 310 | 94.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:08 has no hits.
FMO08462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:05 Download gff for
FMO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klg-RA | 767..1794 | 9..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:09 Download gff for
FMO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klg-RA | 785..1812 | 9..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:02 Download gff for
FMO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klg-RA | 785..1812 | 9..1037 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:02 Download gff for
FMO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22915408..22915636 | 9..237 | 100 | -> | Plus |
| 3R | 22948677..22948829 | 238..390 | 100 | -> | Plus |
| 3R | 22953001..22953201 | 391..591 | 100 | -> | Plus |
| 3R | 22953347..22953468 | 592..713 | 99 | -> | Plus |
| 3R | 22955752..22955902 | 714..864 | 98 | -> | Plus |
| 3R | 22956590..22956687 | 865..961 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:09 Download gff for
FMO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18741130..18741358 | 9..237 | 100 | -> | Plus |
| arm_3R | 18774399..18774551 | 238..390 | 100 | -> | Plus |
| arm_3R | 18778723..18778923 | 391..591 | 100 | -> | Plus |
| arm_3R | 18779069..18779190 | 592..713 | 99 | -> | Plus |
| arm_3R | 18781474..18781624 | 714..864 | 98 | -> | Plus |
| arm_3R | 18782312..18782409 | 865..961 | 93 | -> | Plus |
