FMO08463.5prime Sequence
1128 bp (992 high quality bases) assembled on 2010-06-07
> FMO08463.5prime
CAGTCGACATGACCACTTACCCGACGCGGTTCAGTGGCAGCCTGCTGGTG
GTGGTGCTCCTAATATTGGCCCTGACCACCGAGGATGCGCATGCCAAATG
GAAGTCCACTGGCAGCAGAAGTCGCACCAGTTCCTCTTCTAACAGAAGGA
CCTCCTCACACAGCTACTCTGCGCCATCGCATTCAGTCCCATCGCACCAC
GCAGCTCCTGCTCCACACCATGATAATGTCAGGCTGAGCTACGGAGGTGG
ATCCCACTCGCAGCCGGTGAGCAAGGTGAGCAGCTCCCAAACGCACAGTG
CGGCTCCTTCGGCACCCGCGTCACCAATTGGCTGGAATGTCCCAGCAAAG
CCCCAAGGACCTCCGCCGGCGTACTCAGCCTCGAATCCAGTGGGCGGAGC
TCACACCAACATACATGAGCGTCCGCCAGCCTACAACCCGGCATACAAGC
CAGCTCCACCTAGCTATTCGGCTGCCACCCAAACGCACAGCAACACGAAT
CTCCAGAGCCCATATCGTCCAGCAGGAGCAGCCAGTCCTGGTGCCAGTTC
CAGTTCAAGTGGTTCCCACTACTATGGCGGAGCACACAACACAGCCTATA
GAGGACGTAATAACTCCACTGGTGGATTTGGTTCCTCCGGTGGATATCAG
CCGATAACGGCCACCAATGCCCATAATGTGCAGTCCAGCTATCCTCGCCA
ACAGTTGCCAGCAGGTGCCACCTACCACCCGGCAGGTCAACTTCCAGCCG
GAGCCACCTACCACCCAGCCGGGCAAATTCCAGCCGGAGCCTCATACCAT
CCGGCAGGTCAATTGCCGGCTGGTGCTTCATACCACCCAGCGGGTCAAGT
GCCCCACGGAGCGACCTACTACCCCACGGGTCAGTTCCAGCCGGTGCCAG
CTACCATCCGTCGGGTGGATATCCCGCAGAGCATTCTTACCATCCAGTCG
GACAAGTGCCCCATGAGCCACCTATTATCCACAGACCAGTCGGCGAGGTC
TGCCCGCAGAGCACCTTCTGCCGCTTGGCGGAGTTTGCCTGCAGGACTGT
TACTATCCACAGCCCCGCAAATGTCATCATCAGCTGGATGGCAACTGCTC
TTATCGCTGTACATGGGTGGTGCATCTG
FMO08463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31705-RE | 2664 | CG31705-RE | 83..1219 | 5..1123 | 5045 | 97.4 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 83..1219 | 5..1123 | 5045 | 97.4 | Plus |
| CG31705-RD | 2477 | CG31705-RD | 183..1315 | 9..1123 | 5040 | 97.4 | Plus |
| CG31705-RE | 2664 | CG31705-RE | 786..895 | 744..853 | 220 | 80 | Plus |
| CG31705-RE | 2664 | CG31705-RE | 822..931 | 708..817 | 220 | 80 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 786..895 | 744..853 | 220 | 80 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 822..931 | 708..817 | 220 | 80 | Plus |
| CG31705-RE | 2664 | CG31705-RE | 891..1054 | 705..868 | 205 | 75 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 891..1054 | 705..868 | 205 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11524661..11525666 | 1009..9 | 4740 | 99 | Minus |
| 2L | 23513712 | 2L | 11524822..11524931 | 817..708 | 220 | 80 | Minus |
| 2L | 23513712 | 2L | 11524858..11524967 | 853..744 | 220 | 80 | Minus |
| 2L | 23513712 | 2L | 11524699..11524862 | 868..705 | 205 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:48 has no hits.
FMO08463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:03 Download gff for
FMO08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 74..1169 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:21 Download gff for
FMO08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 78..1173 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:04 Download gff for
FMO08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 78..1173 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:04 Download gff for
FMO08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11524580..11525670 | 1..1083 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:21 Download gff for
FMO08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11524580..11525670 | 1..1083 | 97 | | Minus |
