FMO08464.5prime Sequence
1050 bp (944 high quality bases) assembled on 2010-06-07
> FMO08464.5prime
CAGTCGACATGACGAACCAAGTGATAGTATTTCTACTGTGCGGTTTTGTG
ATCATCAGTGCCGGGAATCCAAATAGTGACGATGTGTTACCGCAGTTTCG
GAATGTCAGGCAACTTAGGTCCTTGGGCATCGAATTTACCGAATACTTTC
GAAATATTTCCACGCAAGATTTAGGCGGCTTGGAGTCCCAGTTTTCGAGT
GAAGATGATCTGCTGTGCCTCAACGATATGAAGGCGCTGATGACAGGACT
TGGAAGTGCTGAGTACTGGGCGTTGAAAATGATCGATGCCTGGGGGTCCA
TTCCATCGGGACTACTCGCCGGTAATTCGTATGACCTGGGCAACTTTGAC
GAGTGTCTGAACATCAGAAAGGAGATCGGCCAGGAGAGAACTATTCAAGG
AAAGTACTGCTTCCTCTCGGTATCCCCTGCCAAAATCCTGGGGATCGAAA
CAAGCATAGGTAGCTTCAGAACTGCCACTTGCTTTCCTGCATCCTGCTCG
GCGATCAACATGAATGCGTTTGTGGATCAATTGATGATGAAGTTACTCAA
TGTCAGTGTTCCAAGTTCAGCCATGAGAATCAGTGAAGGCAGCTGTCAGA
CCAGTGATAGTGAGCCCTGGGATGCCCTCACCATTTTTATGATAGTTATT
TTATCCTTAATGAGTTTCATAGTGGCATTATCTACTCTGTGGGACTACTT
TCTAGTCAAAGATCAGGATCAGCTTCCGGCCATTGTGAAGATCTGTTCAG
CCCGGTCCAATTCTCGAGCCCTATTTCGCGTTGTAGATAGCCATTCGAAT
CCGAATGTAATCGACTTCCCTTCATGGAATTCGCTGCATTGTCCCTGATT
TGGGTGATTACATGCCATCAAGTACTCAGTCACTCTTATTTCGCCACAAC
ATCAATTTGTTCCGTGCCGCAACGTGGGTGAAAAAACCATTTGCCAGTTT
ATTCTCCATGCCTTCATATCCGTGAATCTGTTTCTAGTGATTGGCGGCTT
GTTAGTGCCCTGAATTCATTTGCGATTAATGGATAAGAACCAATGGGAAA
FMO08464.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13325-RD | 2415 | CG13325-RD | 23..1061 | 8..1050 | 4815 | 98 | Plus |
| CG13325-RC | 2181 | CG13325-RC | 23..1061 | 8..1050 | 4815 | 98 | Plus |
| CG13325-RB | 3610 | CG13325-RB | 1452..2490 | 8..1050 | 4815 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13123495..13123858 | 280..643 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 13123160..13123431 | 8..279 | 1360 | 100 | Plus |
| 2R | 25286936 | 2R | 13124042..13124245 | 717..924 | 810 | 97.1 | Plus |
| 2R | 25286936 | 2R | 13123910..13123983 | 644..717 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 13124301..13124415 | 924..1037 | 315 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:40 has no hits.
FMO08464.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:02 Download gff for
FMO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13325-RA | 771..1808 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:10 Download gff for
FMO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13325-RA | 771..1808 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:38 Download gff for
FMO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13325-RB | 1449..2486 | 1..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:38 Download gff for
FMO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13123157..13123431 | 1..279 | 98 | -> | Plus |
| 2R | 13123495..13123858 | 280..643 | 100 | -> | Plus |
| 2R | 13123910..13123983 | 644..717 | 100 | -> | Plus |
| 2R | 13124043..13124245 | 718..924 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:10 Download gff for
FMO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9010662..9010936 | 1..279 | 98 | -> | Plus |
| arm_2R | 9011000..9011363 | 280..643 | 100 | -> | Plus |
| arm_2R | 9011415..9011488 | 644..717 | 100 | -> | Plus |
| arm_2R | 9011548..9011750 | 718..924 | 97 | -> | Plus |
