FMO08465.5prime Sequence
1144 bp (1046 high quality bases) assembled on 2010-06-07
> FMO08465.5prime
CAGTCGACATGGCTGACGACAAAAGCTACGACTCCAGCAACAACAGCGAG
ACCGAAGAGCGTCGGGCCAAGCACAAAAAGGCTAAAAAGCACAAAAAACA
TAAAAAATCCTCGACTGGCAAGACCGAGAAGGACAGGCATGTCCACAAGA
AGCAGAAGAAGGCAAAAAAGCGCCCCCACCGAACAAGCGAATCCACAAAC
GAATCGGACGCCCCGGAAAACGCAAAGTTAAAGCTATCACAAAATTGCGG
GCTGAGCAGCAAGTTCACAGAAATCATGCAGAAGGCCAGCCGGAATGGAG
CCGATTTCCGTGTCGGCAAACCCCTGCTTCCGACGGATCCGAGCAGCCTT
GTTGAAGAAATCACCAAAACTATTCAGAATAAGATGCTGCCTGTCCTGGA
GGTGGCCAGTTCAAGCAGCGAAAGCGATGTGCCCGCCGATGCCGCCAGTC
CTATTATTTTGTCTATTATTGAAGACGAGCTTAATTTGGAGGAATTGATG
CGGCAGAAGGCCCTTCTGCAGGCGCGCCTGGGCGCCTATATGTCGGATCC
CGAGGCTGAGGATAAGGGCGATCTCCTCCCACACACACACTCGCAGCAGC
TGGTTGTCCACACCAAATCAGTGCTCAAAGCTGTCACATCCGTACCGCAG
CCCCAACCCAGCAAGTCTGCAGCGCCGTTGGCTACTGCAACCAGTAAACA
TGCTAATATTAAAAAGTCTACCACGCATAACTCAAATGAATCCGATGTTA
TATTGTTGGATGATTCTAGCGGAGGCCAGCGAACCCCCTCGCCTACACCC
GAGAAACGAAAGCGCCACGCATCCCCGCTCCCAGCGGCTCCGAGAAGCCG
TTGCCGTAGGGATCGTCGTTCGAGGGATCGCGACCGTTCACCCCCCACGT
CGGCGAGCATCAGATCAGCAGACCCAGGTCGCCCGCGGAGCCGCAACGCA
CATGGAGGACCTACGACAGGAAATAATCGCGACAGCAAAGGGAAGACGGG
ACATAGTCGAGACGGATCGGCGAGGATTGATAGGCCGCCGCCACCCACTG
ATATGAAACAGTCTGCACGGGAGCGAGACGTCGCCGATCGATGGCACGGT
CGCCAGCCCCATAAGTTTGATCAACGGCTACGAAAGCGGACGGC
FMO08465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7028-RB | 3112 | CG7028-RB | 150..1301 | 9..1139 | 5080 | 97.4 | Plus |
| CG7028-RE | 2990 | CG7028-RE | 150..1301 | 9..1139 | 5080 | 97.4 | Plus |
| CG7028-RD | 3097 | CG7028-RD | 150..1301 | 9..1139 | 5080 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 210104..210738 | 1056..431 | 2655 | 97.8 | Minus |
| 3L | 28110227 | 3L | 210814..211221 | 431..24 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:13 has no hits.
FMO08465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:58 Download gff for
FMO08465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7028-RA | 155..1257 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:02 Download gff for
FMO08465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7028-RA | 150..1252 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:53 Download gff for
FMO08465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7028-RD | 150..1252 | 9..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:53 Download gff for
FMO08465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 210058..210738 | 431..1096 | 96 | <- | Minus |
| 3L | 210815..211219 | 26..430 | 100 | <- | Minus |
| 3L | 211292..211308 | 9..25 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:02 Download gff for
FMO08465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 210058..210738 | 431..1096 | 96 | <- | Minus |
| arm_3L | 210815..211219 | 26..430 | 100 | <- | Minus |
| arm_3L | 211292..211308 | 9..25 | 100 | | Minus |
