FMO08466.5prime Sequence
1140 bp (1045 high quality bases) assembled on 2010-06-07
> FMO08466.5prime
CAGTCGACATGAACAGCAATACAGATCTCCATCATTCAGATGATCAGGAC
TTTTCGGAATTTCTCAATGAGTATTATCTGCAAAGCAATTCCCAAAGTAT
CGAACCTGAAGCAAGTTACGAAGATGGAGAAATGGAAGCAGAGTGGCTAG
TTTCTGCTGGTTATCCAGAATTGACAAAACCGTTTGAACAAGGGTTAGAG
GTTTCTAAAAAGGACTTGGAACCCATACTGACTACTTTATCGAAGCCCCA
TGCTGAAGCGATTGTACAACTAGTAAGGACTTTAAACAAAACAGTACGGG
TGCGCACAAAAAGTCGGCCAAAACGGAAACCTGATATAAGGGATGTATTT
CGCGAATTTGATGAACAAGGGACAGTTACACGCTCACGAAGTGCCACTCC
GGATTCCCTGGACTCTTTACAAATCGATGAAGCTTGGACCAACAATTCTT
TACCGACTTTTGTAAATGTATATGAAAAAAATACCGAAACTGCCATACAA
TGTGTAGAACAATCAAACGAAATATATTTAAAACAAAACCTGCGACGAAC
CCCTAGCGCCCCGCCTAAAAGCGGCACCTATGCGGATATATTTCGTGGTT
CGCAAGTGCGATGTGATATACCTTTGTACTCGGCGGATGGTGTAGAATTG
CTTGGATATTCACGGATTGGCACCATACAATTTCCTCGGAACCGATCCGT
CTCTGATCCATTTTGTTCTATTGGTCGATCAAAGGAGTCAAGAAGTGAAA
ATGATGCACGATCACAAAAGAAAAAATCGAGTGAAGTGCTGTCAGCCTCA
GAGAATGAATGCGGTCGCCTTTTACCGATGCCCTACAATGTCCTGAGCTT
TGAAAGTATTTGTCGAGATTCTTCTAGTCTTGATAGCTGCGAAGTCCTAG
ATACCTGTGATATCCCTTCAACGCTATTCACAGATGTCGTATTATAAGCG
AAACTGACATGAAACGTTACAGACATACTTTGGTTAGAGTTAGCCACAAT
ATTTGATCGCACAAGTTCTTAGATAAAGATACCTTTTAGCGTCGTCGCAA
AGAAGAGGTATTTTTGGGGTTCTATAACGCTCTTATCGTCGGATCAGCAG
TACTGACTGACTATCTTGTCCATATTTTGGAAGCTAATGG
FMO08466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| conu-RI | 2070 | CG17082-RI | 84..1192 | 9..1099 | 5100 | 98.3 | Plus |
| conu-RG | 2098 | CG17082-RG | 112..1220 | 9..1099 | 5100 | 98.3 | Plus |
| conu-RA | 2210 | CG17082-RA | 224..1332 | 9..1099 | 5100 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4756316..4756588 | 452..724 | 1365 | 100 | Plus |
| 2R | 25286936 | 2R | 4756654..4756944 | 724..1011 | 1305 | 99 | Plus |
| 2R | 25286936 | 2R | 4754500..4754671 | 192..363 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 4749272..4749386 | 9..123 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 4756171..4756259 | 363..451 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 4749444..4749514 | 122..192 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:44 has no hits.
FMO08466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:57 Download gff for
FMO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17082-RD | 122..1205 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:36 Download gff for
FMO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17082-RD | 105..1188 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:47 Download gff for
FMO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| conu-RA | 224..1307 | 9..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:47 Download gff for
FMO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4756316..4756588 | 452..724 | 100 | -> | Plus |
| 2R | 4749272..4749386 | 9..123 | 100 | -> | Plus |
| 2R | 4749446..4749513 | 124..191 | 100 | -> | Plus |
| 2R | 4754500..4754670 | 192..362 | 100 | -> | Plus |
| 2R | 4756171..4756259 | 363..451 | 100 | -> | Plus |
| 2R | 4756655..4757034 | 725..1087 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:36 Download gff for
FMO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 636777..636891 | 9..123 | 100 | -> | Plus |
| arm_2R | 636951..637018 | 124..191 | 100 | -> | Plus |
| arm_2R | 642005..642175 | 192..362 | 100 | -> | Plus |
| arm_2R | 643676..643764 | 363..451 | 100 | -> | Plus |
| arm_2R | 643821..644093 | 452..724 | 100 | -> | Plus |
| arm_2R | 644160..644539 | 725..1087 | 95 | -> | Plus |
