FMO08468.5prime Sequence
1119 bp (979 high quality bases) assembled on 2010-06-07
> FMO08468.5prime
CAGTCGACATGTCCGTTGAGGTGGATTTCGTCGACAAGAAGGAGGTGCAC
CTCCGCACCCTGAAGCAGTCCGGTCACGTGGGATTCGACAGCTTGCCTGA
CCAACTGGTCAACAAGAGTGTCCAGAATGGATTCGTCTTCAACGTCATGT
GTATAGGCGAAACCGGACTGGGCAAGTCGACGCTGATGGACACGCTGTTC
AACACCAGCTTCGAGTCCACGCCGAGTCCCCACACTTTGCCGAGCGTCAA
GTTGAAGGCACACACCTACGAGCTGCAGGAGAGCAATGTGCGACTCAAGC
TCACCATCTGCGACACGGTTGGCTACGGCGATCAGATCAACAAGGACGAC
TCGTTCAAGGCGGTGGTGGACTACATCGACGCACAGTTCGAGAACTATCT
GCAGGAGGAGCTGAAGATCAAGCGATCGCTGGTGACATGCCACGACAGCC
GCATCCACATCTGCCTCTACTTTATTTGCCCCACTGGGCACGGCCTCAAA
TCGCTGGACCTGGTGTGCATGAAGAAGCTGGACAGCAAGGTGAACATAAT
TCCGGTGATTGCCAAGGCGGATACCATTTCCAAGGTTGAGCTACAGCGCT
TCAAGGCGAAGATCATTCAGGAGCTAAACGCCAATGGAGTGCACATCTAC
CAGTTCCCCACCGACGATGAGACGGTGGCCGAGACCAACACCAGCATGAA
CTCTCACATTCCCTTCGCCGTGGTGGGCAGCACGGAGTTTATTAAGGTGG
GCAACAAGCTCATCCGCGCTCGCCAGTACCCCTGGGGCACGGTGCAGGTG
GAGAACGAGACGCACTGCGACTTTGTGAAGCTGCGCGAGATGCTCATTCG
CACCAACATGGAGGATATGCGCGAAAGACACACACGCGCCACTACGAGCT
GTATCGCCAGAAGAGGCTGGAGCAAATGAGCTTCAGCGATGTGTACAGCG
ACACAAGCCCATCTCGTTCCAGCAGACGTTCGAGCAAGCCGCTCCAACCA
TTTGGCCGAGCTGCAGTCCAGGAGGAGAGTTTCGTCAGATGTCTGCAGCG
CGTTATGAAAAGAAGCCGACTGAAGGAAAGCGGATAAGACCTGCATGCTC
AAGTTCGAGAGCCTAAGCG
FMO08468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep2-RA | 1562 | CG4173-RA | 86..1196 | 9..1110 | 5060 | 97.8 | Plus |
| Sep2-RB | 1688 | CG4173-RB | 358..1322 | 155..1110 | 4330 | 97.4 | Plus |
| Sep5-RB | 1729 | CG2916-RB | 284..1199 | 71..984 | 995 | 74.9 | Plus |
| Sep2-RB | 1688 | CG4173-RB | 86..234 | 9..157 | 745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20586567..20587459 | 1042..155 | 4125 | 98.8 | Minus |
| 2R | 25286936 | 2R | 7960663..7961578 | 984..71 | 925 | 73.9 | Minus |
| 3R | 32079331 | 3R | 20588123..20588271 | 157..9 | 745 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blood | 7410 | blood BLOOD 7410bp | 955..1000 | 950..995 | 113 | 71.7 | Plus |
FMO08468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:54 Download gff for
FMO08468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep2-RA | 93..1162 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:14 Download gff for
FMO08468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep2-RA | 86..1155 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:06 Download gff for
FMO08468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep2-RA | 86..1155 | 9..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:06 Download gff for
FMO08468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20586536..20587457 | 157..1069 | 98 | <- | Minus |
| 3R | 20588124..20588271 | 9..156 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:14 Download gff for
FMO08468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16412258..16413179 | 157..1069 | 98 | <- | Minus |
| arm_3R | 16413846..16413993 | 9..156 | 100 | | Minus |
