FMO08469.5prime Sequence
1139 bp (1042 high quality bases) assembled on 2010-06-07
> FMO08469.5prime
CAGTCGACATGCTCTCGCTGCTGCCGCACCACCCGCTCGTCTGCCGCTGC
TGCCTGCTGGAGCAGCCGCCGCTCTACCACAGTCTCTATGACGCCTCTAG
CCAGCTGGCGGTGGAGCTGAAGGCCCTGGCTCCCGCCCTGCGCCTTGAGC
ACGGCGACAACCTCACCGATGTGATATGCGACCTGTGCCTTCGTCGCCTG
CACGACGCCCGCGACTTCCAGCGGCGGTGCGAGCACTCCGAACAGGTGCT
ACGCATGCGGCACGAGCACTGGAAGCACACGGTGGCCGTGGGAGACGCCT
TGGCCCTGGACGATGTGCTTGAGTGCCTGGAGCGAGAAGTGGGCAGCCTG
GAGGGACCGATGTCTGTGCCTCTGCAAGCAAGTAAGCCGGTGGCCCATGT
GGCGCCCTTAATGGAGACCGTTGATTTTGAAAGCCTGGACTTCCAAGACA
GCTCGCACAGTGAACATGATATTCCCTCGTACTGGGAATCGTCGGTAGAT
TCGGGAAGCCTAAACACTCCGCATCATCAGCCGGAGACCGCCGAGCTCTT
TGCAGTCGAGCCCCCAACGCCGCCGGAATCATCCGAAGAGCCGGCACCTG
ATGCCGCAGAAAAGCCCAAGATGCGGAGAGCCAGGCCGCGCCAGGATAAC
GTCAAGCCCAAGGAGAGGAAGGCCTCTGGTGCCGTGCACCCGCGATCCTT
GCACCCGTGCCCCGAGTGCGAAAAGAAGTTCACTCGCAACTTTCAGCTGA
AGCTGCACATGACAGCCGTTCACGGCATGGGCGAGATGAGGTACCAGTGC
GAGGAGTGCCGCAAGAACTTTGCCTCGCGGCACAGTCTTCGCTACCACGT
GAAGTCGGTGCACTCAACGGAGCGTCCATTCGGCTGCCAGCACTGCGACC
GCCGCTTCATCCTGCGCACGCAGCTGCTGTCCCACCTGCGCACCCCACAC
CGGCGAAGCCAAGCCGCGCAAATTCGAGTGCCAGCGCTGCTCGAAGAAGC
TGCCCACCAAGTCCGACCTCCGCCACCCATTTGCCCCTCCCACAACCAAC
ATGGAAGGGCCTTCAAGTGCGATCGCTGCTCGAAGCCTTCTTCAACTCTG
GCAACTCATCACTCTGTGCACAACGGGCGAGAAGAGCCA
FMO08469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30431-RA | 1849 | CG30431-RA | 223..1309 | 9..1094 | 5165 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6204018..6204674 | 429..1085 | 2900 | 97.7 | Plus |
| 2R | 25286936 | 2R | 6202947..6203367 | 9..429 | 2105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:48 has no hits.
FMO08469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:52 Download gff for
FMO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 199..1306 | 2..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:48 Download gff for
FMO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 217..1324 | 2..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:28 Download gff for
FMO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 217..1324 | 2..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:28 Download gff for
FMO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6202941..6203367 | 2..429 | 99 | -> | Plus |
| 2R | 6204019..6204699 | 430..1108 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:48 Download gff for
FMO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2090446..2090872 | 2..429 | 99 | -> | Plus |
| arm_2R | 2091524..2092204 | 430..1108 | 97 | | Plus |
