FMO08470.5prime Sequence
1121 bp (1033 high quality bases) assembled on 2010-06-07
> FMO08470.5prime
CAGTCGACATGAGGTCGTCTAGGACAGCCAGCGATTCAAAATGGGTGCGC
CAGTCAAACGACAACAAAGACACAATGCGCTCCTCGCGGCAGGTTAACAA
AAAGCTTGTGAAGCTATTCCTGGCGGAGGCAGACGACAGTGACGCCACCT
GCACCACATCCACTGCCCTGGACACGACCACAGCAGACAGTGCGTTTTTT
GATAGTGATTTCGAAGAGGAGAGCACTGGGCTCCAGGAATGCGATCCCCC
GCCGGCAAGCAAGTGCCGCACCTGCTTTCGCATCATATCGCGGCATGAGG
ATGCTCAGGATCTATATGACAGGGTCAACATAGCGCTTCTGCACCACATA
AAGGTCATCACTGGGGTGTGGATACAACAAGGAGTCAAAGAGCTACCGCA
TCACATTTGCTCAACGTGCCAGGAAACTGTGAATAAATCCATGGAATTCC
GTGCCAAATGCCAGCAGGTCGACAAAAAGCTTAGGCAGACGACGGAAAAG
TACAACATTCAAATCTGTGACGAGGAAATGGAGTCGGAGCTGGAAAATGT
GCTCTACGAAGAGTCCGCCCAGCAGGCAAAGGGAGTCGTAGGACTAGAAG
ATTTCAGCTCAGAGTTGTTGCCGGATAGTGAGGGTGTCCTGGATGAAGAC
GACTTTCCACTGGATGCAGAGCCAACTCAGTTTTCACTAAGTGAAGATGA
GTTGGATCTAGACAGAGACACAGAAAAAGACTTTGCTTTGGAGCAAAACA
AGTCATGTAATGAAATAATTAGCATACGAAAGTGTAAGACTAAAGAAGAG
ATTGGTAAAGGTAGATCACGGAGCCAAGGTCTATAAGTTGTGCTCGGTGA
GTACAATAGCCTAAGGAAACTGCACCAAAGTATTTCGCTTTCACTACCAA
AGAAACCTCAACTAGGGTGAGTCCAGAGGAGAAAACCGAGGCGCCGCGAA
AGGATACAGCGAGTCATTGAACTATGTCTGCGACAGTGCGCCACACCTTT
CGCCACGCAGTCAGCTGCAGATGCACTTGCTCGTCCCATAGGGCAGATTC
GAGGTGCCCGATGCCGAGAATTCTACGATCTCTATTACCGCGCACATTCA
CCGTAGAGCGTGCACAAGCAG
FMO08470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17803-RB | 2238 | CG17803-RB | 352..1479 | 9..1118 | 4895 | 97.1 | Plus |
| CG17803-RA | 2019 | CG17803-RA | 133..1260 | 9..1118 | 4895 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17799855..17800524 | 1032..371 | 2735 | 97.6 | Minus |
| 3R | 32079331 | 3R | 17800720..17801051 | 375..44 | 1645 | 99.7 | Minus |
| 3R | 32079331 | 3R | 17801111..17801161 | 59..9 | 210 | 94.1 | Minus |
Blast to na_te.dros performed 2014-11-28 21:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 3166..3218 | 610..558 | 121 | 69.8 | Minus |
FMO08470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:10 Download gff for
FMO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17803-RA | 128..1251 | 1..1110 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:41 Download gff for
FMO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17803-RA | 128..1251 | 1..1110 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:50 Download gff for
FMO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17803-RA | 128..1251 | 1..1110 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:50 Download gff for
FMO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17799768..17800523 | 372..1110 | 95 | <- | Minus |
| 3R | 17800724..17801050 | 45..371 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:41 Download gff for
FMO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13625490..13626245 | 372..1110 | 95 | <- | Minus |
| arm_3R | 13626446..13626772 | 45..371 | 100 | <- | Minus |
