FMO08471.5prime Sequence
1136 bp (1032 high quality bases) assembled on 2010-06-07
> FMO08471.5prime
CAGTCGACATGCACATCTCCCAGAGGCGCTGCCTTTATCCGATCTTTCTA
TTCCTGCTGGCCTTTGTTGGCACAGCACTCGGTAGAGTCCAGGAAGTGCA
CAATGTGTTGGAGTTGACGGGTCAGAAAGCCAGCAAGCTGAGGTTCTCCA
CGGACGTGGCCACGGGCAAGTACACTCCGCCGGAGGAGATGGATCCCCAG
TTCTGGTACAAGCTCGCCGACGAGGAGATCGCCAAAAGGCTTCAGCTACC
ACAGCCCAACTCCGACAGGGCCAAAAACGTGATAATGTTCCTCGGGGATG
GTATGCCAATTAGCACAGTCACAGCTGCTCGCATCCTGAAAGGACAACGC
CAAGGAAACACTGGGGAGGAGTCCTCACTGAGCTTCGAGAAATTCCCCTA
TTCGGGATTGAGCAGAACCTACTGCGCCAACGCCCAGGTTCCCGACTCAG
CCTGTACTGCTACCGCTTATCTGTGCGGCGTTAAAACCAACATTATTAAT
ATCGGAGTAAGTGCAGCAGTAAACTTTAACAACTGCACCGCCAGCCAGGA
TCCCGCGAACCGCCTGACCTCCATTGCGGAATGGGCCCAGAATGCCGGCA
AGTCCACGGGATTTGTGACCACCACCACACTGACCCATGCCAGTCCCTCT
GGAGCATATGCCAAGACGGCCAATCGAATGTGGCAAAGCGACACGGATGT
GACCAGCTATGGAGTGGATGCCAGCACCTGCGTCGACATGGCCACTCAAC
TGGTGACCCAGACGCCCGGCAAGAACTTCGAGGTCATGTTCGGCGGCGGA
ATGGGCAAGTTCCTTCCCAAAACCACGAAAGGATAGTCACGGGAAATATG
GCGAGCGATCCGATGGCGTGAATCTGCTGTCCCGGTGGCAAGGGCTCCAC
GATAAAGGTGTCTTGTCACCAATCGCAAGCAGCTGCTTAACTTAGACGTT
CAGCTGCATCAGCATATTGGTACCTTCAATCGGGCTGATGACTTTCACAT
GACGCTGATCCCACTATCAGCCCACTCTCTCGACTCACCGAGTTGCCATC
AGAGCTCAGCCACATGAAATGATCTTTGGTCATAGAGGTGCCTCATGACC
TACGGCACATACGCAGCGGATTGCGCTGGAATGAGC
FMO08471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3290-RA | 1762 | CG3290-RA | 19..1138 | 9..1107 | 4980 | 97.7 | Plus |
| CG3264-RB | 2182 | CG3264-RB | 83..971 | 52..940 | 2325 | 84.3 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 83..971 | 52..940 | 2325 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22206786..22207409 | 1032..417 | 2625 | 98.4 | Minus |
| 2R | 25286936 | 2R | 22207562..22207969 | 416..9 | 2040 | 100 | Minus |
| 2R | 25286936 | 2R | 22209733..22210256 | 940..417 | 1430 | 85.7 | Minus |
| 2R | 25286936 | 2R | 22210320..22210683 | 415..52 | 845 | 82.1 | Minus |
| 2R | 25286936 | 2R | 22204593..22205002 | 820..420 | 500 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:00 has no hits.
FMO08471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:09 Download gff for
FMO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 9..1105 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:53 Download gff for
FMO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 9..1105 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:47 Download gff for
FMO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 9..1105 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:47 Download gff for
FMO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22206774..22207409 | 417..1042 | 98 | <- | Minus |
| 2R | 22207562..22207979 | 1..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:53 Download gff for
FMO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18094279..18094914 | 417..1042 | 98 | <- | Minus |
| arm_2R | 18095067..18095484 | 1..416 | 99 | | Minus |
