Clone FMO08475 Report

Search the DGRC for FMO08475

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:84
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12343-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08475.5prime Sequence

704 bp (704 high quality bases) assembled on 2010-06-07

> FMO08475.5prime
CAGTCGACATGGAAAAGACGAAAACGGCTGCCGAAAAATTGGCGGAGCGC
AAGGCGCGTTTGCTGGACCTACACAAGAAGCGCCAGGAGGCGCGTACGGA
CAACCACCAGGAAGTGGTGGCAGAGGACGCTCGCAAGAAGCTCCCCAAGA
ACTGGGAGGCTCGCAAGCGACAGGCGGAATGGATACTAGCGGACGACAAG
GCGCGAGCCGAGGCGCAGGCAGCTGGCAAGGATTACGAGCGTTTGAAGCT
TTTGGAGGTATCCGCTGTGGATGCGGATCGCATTGAGAAAAAGAAGAAGC
GTAAAGACAATCCAGATCTTGGTTTCTCCACATACGAAGCTCAAACAGCT
AGACAGTACAACCGATTGGTCAAGAGTATGCCTGCTCGCGATTTGGAAAA
GTACGAGCGCCAGAAGGAGGAACTCGGTGACGCCTTCTACGGTGGAGCAC
ACACCACTTTGCATTCGAGGACGAAGGACACTCCAGGTGCTATTAACAAA
ATGGTAACAGACCTGGAGCAGCAGATAGAGCGCCGCAAGAAGTACTCTCG
CAGGAGGATCTACAACGACGATGCGGATGTGGACTTCATCAACGAGAGGA
ATTCCAAGTTCAACAAAAAGCTGGACCGCTTCTACAGCGAGCATACAGCC
GAGATCAAACAAAATTTGGAGCGGGGAACAGCTATTGCAAGCTTTCTAGA
CCAT

FMO08475.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12343-RA 973 CG12343-RA 110..787 9..686 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10822586..10823263 686..9 3390 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:05:56 has no hits.

FMO08475.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:38 Download gff for FMO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12343-RA 59..745 9..699 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:16 Download gff for FMO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12343-RA 110..796 9..699 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:15 Download gff for FMO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12343-RA 110..796 9..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:15 Download gff for FMO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10822577..10823263 9..699 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:16 Download gff for FMO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6710082..6710768 9..699 99   Minus