Clone FMO08476 Report

Search the DGRC for FMO08476

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:84
Well:76
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSgf11-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08476.5prime Sequence

614 bp (614 high quality bases) assembled on 2010-06-07

> FMO08476.5prime
CAGTCGACATGTCTGCAGCCAACATGCCGACGACAACAGGAGCTCAGGGA
TCGGGAAACCAAGTTCCCACAACTAGCACTACGATTGTAAACCACTTCCG
GGAGTTGATCAAGGAACCGAAGAACCTCGACGAGGCGGCCAACTATCTGT
ACCAGTCGCTGCTCGACGACGCCGTAGTCGGAATCTTTAACGAGACACAT
CATCTGCGAAAGTCAGGGAATCTGGCCGCCCTGGACGGAGTGCCGGAGGA
CTCAACCTATCGAATGTGCGAGATGCCCAACCTGGACATATTCGGCATCT
CAACGGCCAAAAAGCCAATGGACTGCACCTGCCCCAACTGTGATCGCCTG
GTGGCCGCCGCCCGCTTCGCCCCGCACCTGGAAAAGTGCATGGGCATGGG
TCGTATCTCGTCGCGAATTGCCTCTCGTCGCTTGGCCACCAAAGAGGGCG
CCACATCCGCCCACCTGCACTCTTCGGGAAATACCGGAGGCACTGATGAT
GAGGATGACGTGGACTGGTCGTCCGACAAGCGTCGAAAGAAATCAAACCA
GAACTCAAGGAACAACGGCTCCAAGAAGAACAATGGCAAAACCTTTGCAA
GCTTTCTAGACCAT

FMO08476.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf11-RB 800 CG13379-RB 149..736 9..596 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18681101..18681688 596..9 2940 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:05:19 has no hits.

FMO08476.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:37 Download gff for FMO08476.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgf11-RB 103..690 9..596 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:12 Download gff for FMO08476.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgf11-RB 149..736 9..596 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:51 Download gff for FMO08476.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgf11-RB 149..736 9..596 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:51 Download gff for FMO08476.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18681101..18681688 9..596 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:12 Download gff for FMO08476.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18674201..18674788 9..596 100   Minus