Clone FMO08478 Report

Search the DGRC for FMO08478

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:84
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9072-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08478.5prime Sequence

473 bp (473 high quality bases) assembled on 2010-06-07

> FMO08478.5prime
CAGTCGACATGTACAATCGCCACATCGCCCACTTATCGGCCGTGCAGGCC
AACGATACGCGCCATAATGCCACGCTGCGTTTCCAGAGTCGTCCCACGGA
TAACGTCTACTCGGATCCACGCCTCGAGCAACTGATTGTCTATCGGGCTT
TGTTGCAGCACCTGCTGCAACAGAAGGATCACTATGATCACGAACGGGAG
CTGGAACTCCAGCGTCTCGAGCGCTTTCGCAGCGAGGGAGCCAACGAGCG
CCGTTTGCAGATCCAGGAGCAAGTGCTCAAAAAGGCACAGGGCATGCTGC
CTGGCATCGTTTTCAAAATGCGCAACGAGGTGGACAAGCTGAAGCGCTTC
CTCGACATCGACAAGCAGCAGGAGCTGCGCCAACTGGACACCGCCCTCTA
CGACAACTGCGTCGAGCTACTCAATAACTGTCAATCTTCTCTGGAAAACA
TTAATGCAAGCTTTCTAGACCAT

FMO08478.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9072-RA 585 CG9072-RA 83..530 8..455 2240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15095513..15095960 455..8 2240 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:35:05 has no hits.

FMO08478.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:34 Download gff for FMO08478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9072-RA 68..527 1..462 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:41 Download gff for FMO08478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9072-RA 77..536 1..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:30 Download gff for FMO08478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9072-RA 77..536 1..462 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:30 Download gff for FMO08478.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15095507..15095965 1..462 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:41 Download gff for FMO08478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14989540..14989998 1..462 98   Minus