Clone FMO08479 Report

Search the DGRC for FMO08479

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:84
Well:79
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31415-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08479.5prime Sequence

497 bp (497 high quality bases) assembled on 2010-06-07

> FMO08479.5prime
CAATCGACATGTGCGCTTGCCCTTGTTCAGGAAGAAGTCTACCACCTCAA
AGCAACAACCCTGATTCTTGCCCAGCTCCTGGCTCACGGGGCGGTCCAGG
TGCTGGTGGAGGTGCCCCTGGTGCCGGTGGAGGCGGCCCAGGTGGTCGTG
GAGGGGGCCCGCCCCAAAAGCGTGGAACGTGTGGCCCCAAACCTTGCGGC
GGACAGCAGTGCAATAAATGCGGTAAGGGAGGCCCTGGAGGAAGAGGTGG
CCCTGGAGGAAAAGGTGGTGGCCCTGGAGGAAGAAATGGCCCTGGAGGTA
GTGGTGGTCCCGGAGGCAGAAATGCTCCCAATGGCGGTGGTGGAGGCGGA
GGAGGACCTTTTGGGCTGAGTGCCCCACCAAACAATCGCGGACCCAAGGC
TCTGGGACTGGCTGCTCTGCTCTTTGCCGTCGGCGTCTACCTTACATTAA
AAATGGTTATTGTGGCCAGTGAAATTGGAGCAAGCTTTCTAGACCAT

FMO08479.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31415-RA 720 CG31415-RA 132..604 7..479 2350 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9744074..9744546 7..479 2350 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 20:05:49 has no hits.

FMO08479.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:33 Download gff for FMO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31415-RA 128..609 1..485 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:12 Download gff for FMO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31415-RA 128..609 1..485 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:10 Download gff for FMO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31415-RA 128..609 1..485 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:10 Download gff for FMO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9744067..9744551 1..485 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:12 Download gff for FMO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5569789..5570273 1..485 98   Plus