FMO08482.5prime Sequence
677 bp (469 high quality bases) assembled on 2010-06-07
> FMO08482.5prime
CAGTCGACATGGAAAACCTAGACGCCACCATAGATAGCATGGAGAACAGT
CGGTTTGCAGCGCTCTACGGGAGTTTGATCAAGGAGTTAACCCTAACTTC
GGAGTTGTCCCAAACGGACATCGCCTGTTTGCTCGTCGTTTATTACAAGT
TCTCAGAGGCCAACGGACCGCAGTGCAAGCAGATGACCAATAATCATTTC
TATCAAATCTTCTTGGTGCTCTTCAACGTGGCCAGTGTCCAGGTGATCGA
ACGCACTCTGCTCGCGATCACAAAAGATACGAAATATGTCAGTCCCAGGG
CCTGGATCCACCTCTTCGATCTCTACACAACCAATGACATTCAAGTGCGA
ATGCGATTTGCTTTCGAGGTCTATGATACCAAAGGCACTGGCGTTATTGA
TCGCAAGCAAGTTGGCACGGCTTGTGAAAAATTTTTTTACGGCGAAGACG
AAGATGAACTTAATGAACTTAAGGCGGATATGACCGAGTTCCTAATGAAG
AAGTTTGATCTGGACAAGGACGGAATCATTTCCTAAAAGGACTAATCTAC
TGTCGTGGAACAGCAGCCAATTTTAGTGGAGTTCTTATGTTGGTTATTTC
CATCAAAAGAGGACAAAGATCTTATGGCCCATTGCATTAACCTGCGACTT
AAAATGAATGCAAGCTTTCTAGACCAG
FMO08482.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sowi-RA | 830 | CG15178-RA | 148..798 | 9..659 | 3045 | 97.8 | Plus |
| CG15177-RA | 1013 | CG15177-RA | 131..758 | 8..632 | 655 | 74.3 | Plus |
| CG15177-RB | 989 | CG15177-RB | 131..586 | 8..460 | 455 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6627391..6627753 | 371..9 | 1710 | 98.1 | Minus |
| 3R | 32079331 | 3R | 6626962..6627145 | 659..476 | 830 | 96.7 | Minus |
| 3R | 32079331 | 3R | 6627232..6627342 | 477..367 | 540 | 99.1 | Minus |
| 3R | 32079331 | 3R | 6628871..6629191 | 328..8 | 390 | 74.8 | Minus |
| 3R | 32079331 | 3R | 6628459..6628615 | 632..476 | 215 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:08 has no hits.
FMO08482.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:48 Download gff for
FMO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15178-RA | 148..801 | 9..663 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:22 Download gff for
FMO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowi-RA | 148..801 | 9..663 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:19 Download gff for
FMO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowi-RA | 148..801 | 9..663 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:19 Download gff for
FMO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6626958..6627144 | 477..663 | 95 | <- | Minus |
| 3R | 6627233..6627340 | 369..476 | 99 | <- | Minus |
| 3R | 6627394..6627753 | 9..368 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:22 Download gff for
FMO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2452680..2452866 | 477..663 | 95 | <- | Minus |
| arm_3R | 2452955..2453062 | 369..476 | 99 | <- | Minus |
| arm_3R | 2453116..2453475 | 9..368 | 98 | | Minus |
