FMO08483.5prime Sequence
606 bp (606 high quality bases) assembled on 2010-06-07
> FMO08483.5prime
CAGTCGACATGGAAATGGATTACTATCTGCCAGTGTATAACGGATCAAAT
TCGGTGGACGTGCCGGGGCTGATTGAAAGTCTCAAGCTGAAGGAAACCAG
TATATCGCCAATCGTGCTGGATCGCTATCCGCCGTACTCCCCGTTCTATG
GCGTGATGGGCGTCGTATTCTCCAGTGTGCTGACCTCCGCTGGAGCGGCC
TACGGAACTGCTGTTTCCGGAACTGGAATCGCCGCCACAGCGGTGATGCG
TCCCGAGCTGGTGATGAAGTCCATCATTCCGGTGGTCATGGCGGGCATCA
TTGCCATATACGGTCTGGTGGTATCCGTGCTCCTATCTGGGGAACTAGCG
CCTGCTCCCAAATACTCGCTGCCCACCGGCTATGTACACCTGGCCGCTGG
ACTTTCGGTGGGATTTGCTGGACTGGCTGCCGGATATGCAGTGGGTGAAG
TCGGCGAAGTGGGCGTGCGGCACATTGCCCTGCAGCCACGCCTCTTTATC
GGCATGATCCTGATCCTTATTTTCGCCGAGGTGCTCGGTCTCTACGGCCT
GATCATTGGGATTTATTTGTACACGGTCAACATTAAGGCAAGCCTTTCTA
GACCAT
FMO08483.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha16-5-RA | 725 | CG6737-RA | 87..665 | 9..587 | 2895 | 100 | Plus |
| Vha16-3-RB | 633 | CG32090-RB | 351..538 | 387..574 | 280 | 77.2 | Plus |
| Vha16-3-RA | 587 | CG32090-RA | 305..492 | 387..574 | 280 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10736379..10736957 | 587..9 | 2895 | 100 | Minus |
| 3L | 28110227 | 3L | 11473690..11473877 | 387..574 | 280 | 76.6 | Plus |
| 2R | 25286936 | 2R | 6627786..6627865 | 322..243 | 265 | 88.8 | Minus |
| 3L | 28110227 | 3L | 11475088..11475224 | 192..328 | 220 | 77.4 | Plus |
| 3L | 28110227 | 3L | 11475373..11475464 | 483..574 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:26 has no hits.
FMO08483.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:46 Download gff for
FMO08483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6737-RA | 1..582 | 9..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:21 Download gff for
FMO08483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-5-RA | 87..669 | 9..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:23 Download gff for
FMO08483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-5-RA | 87..669 | 9..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:23 Download gff for
FMO08483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10736375..10736957 | 9..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:21 Download gff for
FMO08483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10736375..10736957 | 9..593 | 99 | | Minus |
