FMO08488.5prime Sequence
1149 bp (1012 high quality bases) assembled on 2010-06-07
> FMO08488.5prime
CAGTCGACATGCTCTTCAAGTGGCTCCTGTTCCGCCTGTGCATAATGCCG
GCCATGTTCAGCAATACGAAGAGGAAATGCCCCACTGAATGCCAATGCAG
CATGGACGACTTGGATCGTTATCAGGCCATCTGCACAAAAGGAGGCCTGA
ATTCACTGCTGTCGCCCAATGAGTTGGACGTCGATGTTAAAGTTATTATC
ATCCGTGGACCCAGGAATTCCATTACAATCGGTCCAGCGCTGCGGCAGTT
CATGAAACTGGAGATACTCCGCATCACCGACTCCAATCTGCCGGCAATAG
GCGCGGAGTCGTTTTGGGGCCTCAAATATCTGCGGATATTAGATCTGTCC
AAGAACAATATAACCAATATCACAGAGAACAACTTTCGAGGACAGGACAA
CCTACTGGAATTGGACTTATCGAAAAATAAAGTTTTACGCATGGCCAGTT
CAACGTTTCGCCATTTGACGGATCTGCGTCGCCTTAATTTGGCCGACAAC
TCGATTGTGGAGCTCGTGCAGCGCAACTTCTTCATGCTAAGTAGACTCAA
GTATCTGGACCTTAGCGGAAATCCGCTGCAGGATTTACAGCCGGATGTGT
TTCGCGATGTGCCGGAACTCAAAGTGCTCAAGTGTCGCAATTGCCAGCTG
AAAAAAATCAATCCGCAGATGTACAATTTATTGCCGCTTTTAAGCGAATT
GGATTTGGGACGCAACGAGTTCAAGTTTCTCGACAAGGATGAATTCCGCG
ATGTGAAGAGACTGACCAAAGTTCTGTTGGATGGCAATCAATTGTCTGTG
GTGGTGGACCAACTCTTTCGCATGCAGAAGAGTCTTAATCATCTGGATTT
GTCGTACAATCGGTTGGCCAAAGTGCCCAATGACTCGTTTCTACAGCTGA
CCAACTTGACCTTCCTGGACTTGTCCTACACAAACTGGTTCGTCTGGAGC
CGCAGTCCATTAGAGTTTGAGCAATCTGCTGACGCTCACATAAGTGGCCA
CGTACTAATGGATCTAAGGAGATGAAAAAAACCCTTTGAGCTTCATTCCC
CAGCTTACACACCTGGCGAATTGCGGATATGGGCCCAATGGCCGTTGGTC
CTCCTGCCTCCCCTTCAGGCAACTGTAATTCTCATATCTTCCGCGCAAT
FMO08488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdo-RA | 3800 | CG15151-RA | 722..1837 | 9..1125 | 5230 | 98.3 | Plus |
| rdo-RB | 3848 | CG15151-RB | 722..1757 | 9..1041 | 4985 | 99 | Plus |
| rdo-RB | 3848 | CG15151-RB | 1806..1885 | 1043..1125 | 265 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18062360..18062562 | 140..342 | 1015 | 100 | Plus |
| 2L | 23513712 | 2L | 18064633..18064778 | 470..615 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 18065259..18065435 | 846..1019 | 705 | 97.2 | Plus |
| 2L | 23513712 | 2L | 18051461..18051594 | 9..142 | 655 | 99.3 | Plus |
| 2L | 23513712 | 2L | 18063803..18063933 | 341..471 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 18065026..18065154 | 718..846 | 645 | 100 | Plus |
| 2L | 23513712 | 2L | 18064851..18064956 | 614..719 | 530 | 100 | Plus |
| 2L | 23513712 | 2L | 18065576..18065632 | 1043..1100 | 210 | 94.8 | Plus |
Blast to na_te.dros performed 2014-11-28 20:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dm88 | 4558 | Dm88 DM88 4558bp | 4137..4178 | 322..363 | 111 | 73.8 | Plus |
FMO08488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:02 Download gff for
FMO08488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdo-RA | 688..1810 | 2..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:19 Download gff for
FMO08488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdo-RA | 715..1837 | 2..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:54 Download gff for
FMO08488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdo-RA | 715..1837 | 2..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:54 Download gff for
FMO08488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18051461..18051593 | 9..141 | 99 | -> | Plus |
| 2L | 18062362..18062562 | 142..342 | 100 | -> | Plus |
| 2L | 18063805..18063932 | 343..470 | 100 | -> | Plus |
| 2L | 18064634..18064777 | 471..614 | 100 | -> | Plus |
| 2L | 18064852..18064956 | 615..719 | 100 | -> | Plus |
| 2L | 18065028..18065154 | 720..846 | 100 | -> | Plus |
| 2L | 18065260..18065456 | 847..1040 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:19 Download gff for
FMO08488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18065028..18065154 | 720..846 | 100 | -> | Plus |
| arm_2L | 18065260..18065456 | 847..1040 | 95 | -> | Plus |
| arm_2L | 18051461..18051593 | 9..141 | 99 | -> | Plus |
| arm_2L | 18062362..18062562 | 142..342 | 100 | -> | Plus |
| arm_2L | 18063805..18063932 | 343..470 | 100 | -> | Plus |
| arm_2L | 18064634..18064777 | 471..614 | 100 | -> | Plus |
| arm_2L | 18064852..18064956 | 615..719 | 100 | -> | Plus |
