FMO08489.5prime Sequence
1137 bp (1034 high quality bases) assembled on 2010-06-07
> FMO08489.5prime
CAGTCGACATGGATATCCTGGACATCGATGAGGCACTAAAGGATGATTCA
TATATATTTCTGGCGGATAAGACCCACGACGATGTCTCCAACATATTGCA
GCAGTGGAAGACGAACAATCAGCCGCCGTTGCAGCAATTGCACTTGCAGT
ACAACAACGAGGCCTTCAAAAACAATTCGAAAACCTTTACTCGCCCAAAG
CGTCGGAATCTGGATTTCAGCCAAAATGGAGCGGGAAATGACAGCGGTGT
TGGAACCGGGTCGGTCGCGGGTGCCCCAGCAATGCTTCAGCTGGAAATTG
GCGGTCTTGTCACGACGAATATGCACAAATCCTTCCTGCAAGACACCTCA
CCGCCGTCTTCCATCTGCTCCTCCATGAACACTGAACGGATGAACAACTC
GCTAATCACCTCAGCAGACTTTACGAACTTGAACTTCCTTCAATCCACAA
TTGGTCTTGAGCAGGATCCAAACCTTACCACTACGCTTACCAACCAGACA
ACTGATAACATGGGAATCGGCGGCAGCATAGGCGGATATACGCTCAGTGA
CATGATCCGGGATCGCAAGGCGCTGGAGTCGCTGACCATGTGTGAGGACG
ATGGGACTCTTATCAAAGACTCGCACATCGGGCAAATTGACGAAATATCG
TTGACACTGAGCAAAACTGCTTCCGGCTGCAGCACAATGGACAACAGCAC
AGACAGTATGTCCATTCCCCTGGCCGCAGATCGAACGATGCCCGTTGTGG
TATCGGCAGTTTGTCCTGCCCTACAGCGTACCATGATTTTAGGGGAGGAG
ATGATCGGCGACACAACTTTTAACCTCGTGGATAGCCTTACACTTCTGCG
CTGCAATCAGAGTCTGAGTCTCTGCCAGTCGATGGAATGCGACATTCAAA
GACCACTGCGAGTGCTACTACAGCGGACGAACCCTGTGCTAACAGGTAGG
CAGATGAATACTACCTTCACCGACGGTTGCACACTCCTGGAGGGCCGCTG
TGAAACGCCTGAAATATTGACAGGAGCTGGCCTTGCTCCACATGGATCTC
CAACCCACTTACAACAAACATGCGCTCACCTGCTACCGATTACACATATT
AGCAGCCAGAATACCTACCTTAGGGAAGGGGAGATTG
FMO08489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp2-RC | 4496 | CG9028-RC | 141..1233 | 6..1087 | 5070 | 98.4 | Plus |
| ssp2-RA | 3435 | CG9028-RA | 141..1233 | 6..1087 | 5070 | 98.4 | Plus |
| Nxf3-RC | 7512 | CG32135-RC | 3313..4249 | 162..1087 | 4290 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13968761..13969631 | 219..1079 | 3730 | 97.6 | Plus |
| 3L | 28110227 | 3L | 13965524..13965630 | 56..162 | 535 | 100 | Plus |
| 3L | 28110227 | 3L | 13968646..13968702 | 162..218 | 285 | 100 | Plus |
| 3L | 28110227 | 3L | 13965343..13965392 | 6..55 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:24 has no hits.
FMO08489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:00 Download gff for
FMO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp2-RA | 134..1293 | 1..1137 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:22 Download gff for
FMO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp2-RA | 136..1295 | 1..1137 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:33 Download gff for
FMO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp2-RA | 136..1295 | 1..1137 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:33 Download gff for
FMO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13965338..13965392 | 1..55 | 94 | -> | Plus |
| 3L | 13965524..13965630 | 56..162 | 100 | -> | Plus |
| 3L | 13968647..13968702 | 163..218 | 100 | -> | Plus |
| 3L | 13968761..13969702 | 219..1137 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:22 Download gff for
FMO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13958438..13958492 | 1..55 | 94 | -> | Plus |
| arm_3L | 13958624..13958730 | 56..162 | 100 | -> | Plus |
| arm_3L | 13961747..13961802 | 163..218 | 100 | -> | Plus |
| arm_3L | 13961861..13962802 | 219..1137 | 96 | | Plus |
