FMO08491.5prime Sequence
1093 bp (1015 high quality bases) assembled on 2010-06-07
> FMO08491.5prime
CAGTCGACATGCGTGTAATTGCGCCGCGTAGATCGTCAACGTCAGCGGCG
GGCAGCGGCAGTCTCTACGGTACATCGGCGGTCGGCACCTCCAGCGGCAG
CACCACCAGCAGCAACTCCACCAGCGGCAGTCACCACATCAGCATCACCG
GAAGCGGTGCGGTGGATCGGACCAGCGGAGGCGCCGCCACGAACGGTTAC
TCCCGCATATCGAGCAGCTACGACCGCGGCAGCAGTCTGTCCAAGTGGCT
GCCCACCTCGTCCGGCGGCTCCAACTCGTCGGGCTACGGCAGCAGCTACT
ATCCCACCTCTTACTCAACGTTCTCCGCCAACAGCGGCTCCTCAAGCGCC
TCGTATGCGCCGCGCTCCAGTGTGCAGAGGAGCAGCGTTGGTACCACGTC
GTCAACGTCGTATATGAGCGGCGGATCCGGCAGCAGCTCGTCCGCCTACC
GCACCTCCTCGTATCTGAGCGGGTCCAGCTATGATTCACCTACGTACAGC
CGATACGGATTACCGCGCAAAGCGGCGTCCAGAATTACCACCAACGGGGA
CAGCTTGAGCGGATCGGCCAAGAGGGAGGACTACGGTCTACGGCGTGGTC
ATGATACCGTCAAGAAACCACCGATCAGCGGAGGGAGTGTTGGCCACAAC
TGCAGCAGCAGCACTGCGAGTAGAGACACCAAAGCCGTCGATGGCAACAA
ACGGCTGTCCAGTTCATCCTCATCTCCATCGCTGGCCCGTTTGGTGGCCA
CCTCCGGACTGGACATTTATGAAAAGTACAGTCCGGCCAACTATAAACCC
AACTGTGAACTGTCACGTTCCAGGTCGGGGCATTCTGAGACGGATCTAGA
AACGGAAGCAACATGAGACGACGCCCACCTGTACGGTGACCCTGGATAGG
CCATGGAGCAGCACCAGTCGATACAGCGCCTGTACAGGAACAGCAGCGAT
GCAGAGGGGACTCTCGCTTCGCGAAAAATTGGGCTCGGCAAGTACTCGAT
AGCAGCAGCAGTAGCAGTGCGATGTGCCACGCCACTTACCTCGAGCAACG
CACGCGGGCAATCAGCGGAGGAGTACCACGAGCACGGGGTTAG
FMO08491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14619-RG | 5178 | CG14619-RG | 333..1435 | 9..1088 | 4935 | 97.8 | Plus |
| CG14619-RA | 3434 | CG14619-RA | 573..1675 | 9..1088 | 4935 | 97.8 | Plus |
| CG14619-RD | 3247 | CG14619-RD | 386..1488 | 9..1088 | 4935 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22457760..22458260 | 9..509 | 2505 | 100 | Plus |
| X | 23542271 | X | 22462400..22462919 | 510..1019 | 2095 | 97.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 131..195 | 86..147 | 146 | 73.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9161..9225 | 86..147 | 146 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6856 | 105..235 | 139 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6838..6895 | 643..700 | 119 | 67.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7986 | 98..129 | 115 | 84.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9430 | 98..129 | 115 | 84.4 | Plus |
FMO08491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:58 Download gff for
FMO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14619-RA | 566..1680 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:03 Download gff for
FMO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14619-RD | 379..1493 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:52 Download gff for
FMO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14619-RD | 379..1493 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:52 Download gff for
FMO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22457753..22458260 | 1..509 | 99 | -> | Plus |
| X | 22462400..22463006 | 510..1093 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:03 Download gff for
FMO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21859589..21860096 | 1..509 | 99 | -> | Plus |
| arm_X | 21864236..21864842 | 510..1093 | 95 | | Plus |
