FMO08493.5prime Sequence
1009 bp (1009 high quality bases) assembled on 2010-06-07
> FMO08493.5prime
CAGTCGACATGGGAAGTGATCGCACGTTAAAAAAGCAAAAGATGTCGGTA
TTACAGGAACTCAAGAAAATCACCACAATTGTGGCTGACACCGGCGACTT
TGAAGCCATCAACATCTATAAGCCCACGGATGCCACCACTAATCCCTCCC
TCATCTTGTCCGCTTCGTCCATGGAGCGGTACCAGCCGCTGGTCCAAAAG
GCGGTGGAATACGCCAAGGGCAAGAAGGGCTCCGTGAGTGAGCAGGTGGC
CGAGGCCATGGACTACCTGTGCGTGCTGTTCGGAACGGAAATCCTGAAGG
TTGTGCCCGGTCGCGTTTCCACCGAGATCGATGCCCGCTTGTCCTTCGAC
ACCAAGAAGAGCGTGGAGAAGGCCCTGAAGCTGATCGCCCTGTACAAATC
CCTGGGCGTCGACAAGGAGCGAATTCTGATCAAGCTGGCGTCCACCTGGG
AGGGCATCAAGGCGGCCGAGATCCCGGAGAACGAGCACGGTGTGCACTGC
AACCTGACGCTCCTTTTCTCGTTCGCACAGGCCGTGGCTTGCGCCGAGGC
CGGCGTGACCCTCATCTCCCCGTTCGTGGGCCGCATCCTGGACTGGTACG
TGGCCAACACGGATACCAAGAAGTTCGAGGCGCTCAAGGACCCGGGCGTG
ATCTCCGTGACGAACATCTACAACTACTACAAGAAGTTCGGCTACAAGAC
CCTGGTCATGGGCGCCTCCTTCCGTAACGTGGGCGAAATCAAGGCCCTGG
CTGGCTGCGATCTGCTTACCATCAGCCCAGCGCTGCTTAAGGAGCTGGAG
AACGAGACCGAGTCGGTGGTCACCTACCTGTCCGTAAGCAACGCCAAGCT
GCAAGGACATCGAGAAGATCACCGTCGATGAGAGCCGGTTCCGCTGGCTG
CTCAACGAGGACGCCATGGCACCGACAAACTTTCCGAGGGCATCAGAAGT
TCGCCGTGATACTGTTAAGCTGGAGAATTTGATAGACCTATCTAGCAAGC
TTCTAGACA
FMO08493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tal-RA | 1116 | CG2827-RA | 21..1009 | 9..993 | 4795 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23941239..23941995 | 229..983 | 3575 | 99.3 | Plus |
| 2R | 25286936 | 2R | 23941055..23941180 | 104..229 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 23940430..23940526 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:55 has no hits.
FMO08493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:57 Download gff for
FMO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tal-RA | 18..1010 | 9..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:47 Download gff for
FMO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tal-RA | 21..1013 | 9..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:44 Download gff for
FMO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tal-RA | 21..1013 | 9..999 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:44 Download gff for
FMO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23940430..23940526 | 9..105 | 100 | -> | Plus |
| 2R | 23941057..23941180 | 106..229 | 100 | -> | Plus |
| 2R | 23941240..23942011 | 230..999 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:47 Download gff for
FMO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19827953..19828049 | 9..105 | 100 | -> | Plus |
| arm_2R | 19828580..19828703 | 106..229 | 100 | -> | Plus |
| arm_2R | 19828763..19829534 | 230..999 | 98 | | Plus |
