FMO08494.5prime Sequence
788 bp (788 high quality bases) assembled on 2010-06-07
> FMO08494.5prime
CAGTCGACATGCGACGACGTGTAGGCCTGGGAGCCATACAGCAGCAGAAG
CTGGCTGCGGAGAAGTACAAGGACAAGGGCACCGATCTGCAGGAAAACCA
ACTCGAACAGATGACCAAGCAAATGGAGGTATTCCGGGTGAAACTCGAGG
AATTTGCGATGAAACACAAGGAGGACATACGCAAGAATTCGCAGTTCCGC
AAACAGTTTCAGGAAATGTGCGCCGCCATCGGCGTGGATCCGCTGGCCAC
CGGTAAAGGATTCTGGAGCGTTCTGGGAATGGGCGATTTCTACTACGAAC
TGGGCGTCCAGGTGGTGGAGGTTTGTCTAGCTGCCAATCACAAAACCGGT
GGACTTATGGAGCTGGACGATCTGCGACGTCGGCTAATCGCCGCCAGAGG
TCAGAGTTCAGTGCACCAGGAGATCACCAAGGAGGACATCCTAATGGCCG
CTAAGAAATTGAGCATTTTTGGCAACGGCTTTGTGGTTCACAAGCTGGGC
AAGGGCAAGTACATAGTTCAGTCCATTCCCGGAGAGCTGAGCATGGAGGA
GACCAACATACTGAATGCCGCATCCAATACCGAACAAGGCTGTGTTACGC
AGAGTCAGCTGATCAAGGATTTGGGCTGGACCGACTATCGTGCTCAACAG
TCACTGGACAAGGTGCTCGGCGAAGGTCTCTGTTGGATTGACAAGCAGGC
GGGCGATGAGCCAGCCTATTGGTTTCCCAGTTTGTTTCCCGGTCGAAACG
CACAGACAACGGCCGCCACAGCAAGCTTTCTAGACCAT
FMO08494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lsn-RA | 941 | CG6637-RA | 111..872 | 9..770 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21865278..21865747 | 9..478 | 2350 | 100 | Plus |
| 3R | 32079331 | 3R | 21865814..21865961 | 478..625 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 21866024..21866169 | 625..770 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:55 has no hits.
FMO08494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:28 Download gff for
FMO08494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6637-RA | 74..843 | 1..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:34 Download gff for
FMO08494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lsn-RA | 106..872 | 1..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:22 Download gff for
FMO08494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lsn-RA | 106..872 | 1..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:22 Download gff for
FMO08494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21866025..21866169 | 626..770 | 100 | | Plus |
| 3R | 21865273..21865747 | 1..478 | 99 | -> | Plus |
| 3R | 21865815..21865961 | 479..625 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:34 Download gff for
FMO08494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17690995..17691469 | 1..478 | 99 | -> | Plus |
| arm_3R | 17691537..17691683 | 479..625 | 100 | -> | Plus |
| arm_3R | 17691747..17691891 | 626..770 | 100 | | Plus |
