FMO08495.5prime Sequence
662 bp (662 high quality bases) assembled on 2010-06-07
> FMO08495.5prime
CAGTCGACATGCCAGCGGATCCATCTGAAGAAGTTGCCCCTCAGGTCCCG
AAGACCGAGCTAGAAGAGCTGCAAATTAATGCGCAAGGAGTAGCCGATGA
GTCCCTGGAAAGTACGCGACGTATGCTTGCTCTGTGTGAGGAGAGCAAGG
AGGCAGGGATTCGAACACTTGTAGCCCTTGATGATCAAGGAGAACAACTG
GATCGTATTGAAGAAGGAATGGATCAAATTAATGCAGACATGAGAGAAGC
AGAAAAAAATTTAAGTGGAATGGAAAAATGTTGCGGCATTTGTGTTCTTC
CGTGCAATAAAAGTCAATCATTCAAAGAAGATGATGGGACCTGGAAAGGA
AATGATGACGGAAAAGTTGTAAATAATCAGCCACAGAGAGTGATGGATGA
TAGAAATGGCATGATGGCGCAAGCGGGTTATATTGGCAGGATAACGAACG
ACGCTAGAGAAGATGAAATGGAAGAAAATATGGGCCAGGTAAACACTATG
ATAGGCAATCTCCGAAATATGGCATTGGATATGGGCTCTGAGCTGGAAAA
TCAAAATCGTCAAATTGATAGAATAAACCGGAAGGGTGAATCTAATGAAG
CGCGGATAGCAGTTGCTAATCAAAGGGCACATCAACTATTAAAGGCAAGC
TTTCTAGACCAT
FMO08495.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap25-RA | 2233 | CG40452-RA | 133..768 | 9..644 | 3180 | 100 | Plus |
| Snap25-RC | 2233 | CG40452-RC | 133..768 | 9..644 | 2925 | 97.3 | Plus |
| Snap24-RA | 1846 | CG9474-RA | 371..582 | 93..304 | 280 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24258490..24258637 | 438..585 | 740 | 100 | Plus |
| 3L | 28110227 | 3L | 24253793..24253922 | 311..440 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 24210019..24210138 | 191..310 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 24079466..24079558 | 9..101 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 24297679..24297740 | 583..644 | 310 | 100 | Plus |
| 3R | 32079331 | 3R | 9762569..9762780 | 304..93 | 280 | 75.5 | Minus |
| 3L | 28110227 | 3L | 24161129..24161179 | 142..192 | 255 | 100 | Plus |
| 3L | 28110227 | 3L | 24131194..24131237 | 100..143 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:27:17 has no hits.
FMO08495.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:26 Download gff for
FMO08495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap25-RA | 76..722 | 1..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:12 Download gff for
FMO08495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap25-RA | 125..771 | 1..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:34 Download gff for
FMO08495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap25-RA | 125..771 | 1..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:34 Download gff for
FMO08495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24079464..24079558 | 6..101 | 98 | == | Plus |
| 3L | 24210019..24210138 | 191..310 | 100 | -> | Plus |
| 3L | 24253793..24253921 | 311..439 | 100 | -> | Plus |
| 3L | 24258492..24258636 | 440..584 | 100 | -> | Plus |
| 3L | 24297681..24297743 | 585..648 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:12 Download gff for
FMO08495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 24072564..24072658 | 6..101 | 98 | == | Plus |
| arm_3L | 24203119..24203238 | 191..310 | 100 | -> | Plus |
| arm_3L | 24246893..24247021 | 311..439 | 100 | -> | Plus |
| arm_3L | 24251592..24251736 | 440..584 | 100 | -> | Plus |
| arm_3L | 24290781..24290843 | 585..648 | 96 | | Plus |
