FMO08496.5prime Sequence
1108 bp (1005 high quality bases) assembled on 2010-06-07
> FMO08496.5prime
CAGTCGACATGACTGTCTCTTACACCGCTGAGGTGGCAACATGCAGCCAT
TTCGGCTGCTTCTGGAAGCTTTTGATGAGATGGCGCGCAAGTATCTACAA
GATAATATGGGTGGATCTTCTGGCATTCCTGTCCTGCTTCTACTTCATGG
CTGTAATATATCGCTATGCTCTCAGGGACGTCGATAAGCCTGTTTTCGAG
GACATTGTGATGTACTGTCATAGCTATAGCAACCTGATTCCGCTCTCTTT
CGTACTGGGATTTTATGTGGGCATTATCATAGAACGCTGGTGGAATCAAT
ATATCACAGTTCCTTGGCCCGATCCGCTGGCGGTTTATGTGAGTGCCTTG
GTCCGTGGCCAAGATGAACATGGTCGTCTGATGAGACGCACGATTATGAG
ATATGTGTGCTTGGCATTGACTATGGTGCTCTCGAGTATATCGCCAGTTA
TAAAGCGTCGCTTTCCAACCTACGATCAGTTAATTGAGGTGGGTTTGCTA
AACGCCAACGAGGCAAATATTATGAAGGCAATGGATGTGAAGTTTCCAAA
GCACCCAAAGTATTGGATGCCCATTGTCTGGGCCGCCAGTATTGTAACAA
GGGCTCGAAAGGAAGGTCGAATTTGGGATGACTTCTCCCTGAAGTCCATG
ATAGATGAGCTCAATAAATTCCGAGCTGGATGCAATATGCTCATCCATTA
CGATACAATCTCAGTGCCACTGGTCTATACACAGGTCGTCACCCTGGCCG
TCTACTCGTACTTTGTGGCCTCGATATTTGGTCACCAGTGGATCGATCGG
GATATTAAGCACTACAATAATATTGTTAGTTACTACTTTCCGTTGTTCAG
CACTCTGGAGTTTTTCTTCTTCATGGGCTGGCTTAAGTGCCGAGACATTG
ATTTGTCCTTTTGGCGATGACGACGATGACTTTGACTGAACTGGCTGATC
GATCGCACTTGCAAGTGAGTTACTGATCGTTGATGAAATGCAAAATGATC
ATCGCAGTTGGTGGAGGATCAGTATTGGGATGAGGTGTTTTTCCGCTGAT
TTGCTATGCTGAGTTCCGATAGGACCGACATCCGAAGGCATCACGCTCCG
ATGCCATA
FMO08496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best3-RA | 1694 | CG12327-RA | 46..1140 | 9..1093 | 5020 | 97.9 | Plus |
| Best1-RD | 2930 | CG6264-RD | 994..1097 | 564..667 | 220 | 80.8 | Plus |
| Best1-RC | 3074 | CG6264-RC | 994..1097 | 564..667 | 220 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15301887..15302432 | 736..191 | 2700 | 99.6 | Minus |
| 3L | 28110227 | 3L | 15301526..15301840 | 1040..732 | 1250 | 96.8 | Minus |
| 3L | 28110227 | 3L | 15302500..15302612 | 190..78 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 15302670..15302740 | 79..9 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 10165299..10165402 | 667..564 | 220 | 80.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:20:54 has no hits.
FMO08496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:10 Download gff for
FMO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best3-RA | 1..1054 | 9..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:28:55 Download gff for
FMO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best3-RA | 39..1099 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:39 Download gff for
FMO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best3-RA | 39..1099 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:39 Download gff for
FMO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15301510..15301837 | 735..1057 | 96 | <- | Minus |
| 3L | 15301889..15302432 | 191..734 | 99 | <- | Minus |
| 3L | 15302500..15302610 | 80..190 | 100 | <- | Minus |
| 3L | 15302670..15302747 | 1..79 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:28:55 Download gff for
FMO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15294610..15294937 | 735..1057 | 96 | <- | Minus |
| arm_3L | 15294989..15295532 | 191..734 | 99 | <- | Minus |
| arm_3L | 15295600..15295710 | 80..190 | 100 | <- | Minus |
| arm_3L | 15295770..15295847 | 1..79 | 95 | | Minus |
