FMO08516.5prime Sequence
1160 bp (1046 high quality bases) assembled on 2010-06-10
> FMO08516.5prime
CAGTCGACATGTTCCCGCAACGCAGCTCGGAGCTGTACCGCACTCCGGTG
ACCCACCAGCCTCCGCCGGCACTGGAGCTGGCCGGGAATCTGGAGTACCC
GAACCTCAACATTGCGGACCTAAACGCGCGATTGGAAAACCTTTCGCCGC
GACTGCACGACTGCTGGGACAGCATCGCTATCAATGATCACAACCACCTG
GCCCTGGCCACAAACCGACGCGAAGGACGCCAATGGTGGGGCATGTTGTT
CGGCTACGGACGCGACCAGATGCACCACATGAGCGTGGACTCGGCGAACT
TCAAGCTGCAGGCGGAGCACACGGTGAACATTGTGCGCTACGCTGAGGAT
GATTTCCTACTGGTGGCCCTTGGGGATACCCGACTCCAGGCCTGGTCCAC
ATACTCCAAGGTGCGAGATTCTCAGTCGCCATACTGCCTCTTCCTCGTGG
GCGAGTCCAGTGCGCATCCCACACCCATCAGCCAACTGAGCGTCTTCAAG
GCGGATCCCCGCACTGCCGTTTCGGGCTCAGCGGACAGTACCCTCAATGT
CTGGGATCTCTCGGGCGCCGATATGGTGAGCACCTACAGATCGCGCTCCT
CGCATACCGACAAGTTGACTGGCCTGGCCACACCCGCAGCTTCAGTCGAT
AAATTTGTGACCTGTGATCGTGGCGGCTGTGCCCGCCTTTGGGATGTCCG
GGCAGCGGCTCCATCTTCCACGTGCCTCTATGCGGATGCCAGCCACGTGC
TGAGCTTCACCAGTGCCGCCTGGGCAGCTGCCTCGGAGCTGCAGGGTGAC
AATCACATCTATCTCGGGGACTACGACGGCAAAGTTCATACTCTGGACAT
TCGAGTGCCACGAAAACTGGCGGAAACCAGGGAATACTTCGACAAGGGCC
ATGTCGCCCAGTTATTAATCAATGGGCCCCATCTGGCTGCGATGAGCAAT
TTGCCCGCCTCCGTGAAGTGGCCAATGGGCAGGCGGGGCATGAGTCATCT
ACACGCACAGGACACCCATTCTCGCCTAACTGATGCCGTTTGGACCGATG
ATAGCACCCTCATCACCATTGGACATGGCCGCAATGGGGAGCCACGCGAT
CAGCAAGCTTTCTAAACATTCGTTGGGCCGCGGTCCCAGTAATGGCTAAA
TATAATCTAT
FMO08516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vls-RA | 1310 | CG10728-RA | 82..1160 | 9..1084 | 5260 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20065057..20065598 | 550..9 | 2695 | 99.8 | Minus |
| 2L | 23513712 | 2L | 20064624..20065001 | 926..549 | 1875 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20064411..20064573 | 1084..925 | 635 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:47 has no hits.
FMO08516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:38:20 Download gff for
FMO08516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 70..1164 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:37 Download gff for
FMO08516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 74..1168 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:44 Download gff for
FMO08516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 74..1168 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:44 Download gff for
FMO08516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20064411..20064572 | 926..1084 | 96 | <- | Minus |
| 2L | 20064625..20065001 | 549..925 | 99 | <- | Minus |
| 2L | 20065059..20065603 | 1..548 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:37 Download gff for
FMO08516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20065059..20065603 | 1..548 | 99 | | Minus |
| arm_2L | 20064411..20064572 | 926..1084 | 96 | <- | Minus |
| arm_2L | 20064625..20065001 | 549..925 | 99 | <- | Minus |
