FMO08517.5prime Sequence
872 bp (872 high quality bases) assembled on 2010-06-10
> FMO08517.5prime
CAGTCGACATGTCGCTAGATTATGAGAAGATGAGCTGGTCGGATGTACGG
GATCAGTTCAGAACGTGGCGCGAGGAGACGGGTCGCCACAGCGAGGAGGT
GGTCCAGCTGTGGGTTGCTGTGCTAGAGGACAAGGTGCACAAGACCGGCA
ACGAGCGGCATCTCATCCTGGAGCAGGTGATCATCGCGGCATTGGATACG
GCTCGCTTTGACATCGCCACCAAGTGTACCAAGCAGCTGTCCCTCGAGTT
CCCGGGCAGCCTGCGCGTGATGAAGTTCAAAGCGATGCGCTACGAGGCCC
TGGAGCAGTACGATGAGGCCGACGAGGTCCTGGATGCAATCATTGCTAAG
GACGAGACAAATGCCGCGCCCAGGAAGCGCAAGATTGCCATCCTTAAGGC
CCGTGGTCGTCGCCTGGAGGCCATCAAGGAGCTCAACGAGTATCTGAAGA
AGTTTATGTCTGACCAGGAGGCATGGCATGAGCTGTGCAACATGTATCTG
GCTGAAGGCGAGTTTGGCAAAGCTGCCTTCTGCATGGAGGAGGTTTTGCT
GCACAATCCGCATAGCCATCTAATACACCAGCGTTTGGCAGAAATACGAT
ACACAATGGGTGGCGTCGAGAATATGGAATCGGCTCGCACTTACTATTCG
CAGGCCCTGAAGCTTAATCCGCATAACTTGAGGGCCCTTTATGGCATTTA
CTTGTGCTGCAACCATTTGGACAACTCTCGAGCCGTGAGCTCCAAACGGA
AGGAGCTGCAAAAGTTGAGTCAGTGGGCCCTCGAACAACTTTTGACTAAA
CAAACGATTGTACCCTTGGAGGCTGCTTTTGGAAACCTGGAAATCAAATC
GAATGCAAGCTTTCTAGACCAT
FMO08517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3678-RB | 1216 | CG3678-RB | 112..957 | 9..854 | 4170 | 99.5 | Plus |
| CG3678-RA | 1088 | CG3678-RA | 112..957 | 9..854 | 4170 | 99.5 | Plus |
| CG17556-RB | 1089 | CG17556-RB | 113..958 | 9..854 | 4155 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16995403..16995814 | 453..42 | 2060 | 100 | Minus |
| 3R | 32079331 | 3R | 16991182..16991593 | 453..42 | 2000 | 99 | Minus |
| 3R | 32079331 | 3R | 16990593..16990839 | 854..608 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 16994814..16995060 | 854..608 | 1160 | 98 | Minus |
| 3R | 32079331 | 3R | 16990900..16991057 | 609..452 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 16995121..16995278 | 609..452 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:59 has no hits.
FMO08517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:38:18 Download gff for
FMO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3678-RA | 93..946 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:34 Download gff for
FMO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3678-RA | 104..957 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:44 Download gff for
FMO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3678-RA | 104..957 | 1..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:44 Download gff for
FMO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16990593..16990838 | 609..854 | 100 | <- | Minus |
| 3R | 16990901..16991057 | 452..608 | 100 | <- | Minus |
| 3R | 16991184..16991592 | 43..451 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:34 Download gff for
FMO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12816315..12816560 | 609..854 | 100 | <- | Minus |
| arm_3R | 12816623..12816779 | 452..608 | 100 | <- | Minus |
| arm_3R | 12816906..12817314 | 43..451 | 99 | <- | Minus |
