FMO08519.5prime Sequence
383 bp (383 high quality bases) assembled on 2010-06-10
> FMO08519.5prime
CAGTCGACATGCGAGATGTGGACGACAAGATTATATATGCACTAAATGCC
CTGCCAACGGAGTCGTTTAAGGGTCAAGTGAACAGTGAAAGCACCTGTCG
CGATCTGTACGCGAAGCTCCAGGAGTCACACTTGGCCAGGCAAGAAAGCA
TACGCAGTTGCATAACAATTTCGGCTAGTAATCTGAAGAAGCTAAGGGAA
AAGCGGGAGACCCAGCCGGATGATGTGGATACGGATAACCAGTTTAGGGC
GGAGCAGCGCAAGCTGCGGGTTCTCCAGGCCGAGCTCAATGTCGAGGACA
TCATTAAAGATCGTTCCTACAAGACCTTCAATGAACGATGCCGGTCCTAT
TTTCATGCTGGCCAAGCAAGCTTTCTAGACCAT
FMO08519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15881-RC | 671 | CG15881-RC | 170..526 | 9..365 | 1785 | 100 | Plus |
| CG15881-RA | 660 | CG15881-RA | 159..515 | 9..365 | 1785 | 100 | Plus |
| CG15881-RB | 1642 | CG15881-RB | 1141..1497 | 9..365 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19806321..19806452 | 9..140 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 19806509..19806632 | 140..263 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 19806684..19806787 | 262..365 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:45 has no hits.
FMO08519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:38:16 Download gff for
FMO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15881-RB | 1136..1497 | 2..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:26 Download gff for
FMO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15881-RB | 1136..1497 | 2..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:38 Download gff for
FMO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15881-RB | 1136..1497 | 2..365 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:38 Download gff for
FMO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19806316..19806452 | 2..140 | 97 | -> | Plus |
| 3L | 19806510..19806632 | 141..263 | 100 | -> | Plus |
| 3L | 19806686..19806787 | 264..365 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:26 Download gff for
FMO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19799416..19799552 | 2..140 | 97 | -> | Plus |
| arm_3L | 19799610..19799732 | 141..263 | 100 | -> | Plus |
| arm_3L | 19799786..19799887 | 264..365 | 100 | | Plus |
