FMO08520.5prime Sequence
1138 bp (1000 high quality bases) assembled on 2010-06-10
> FMO08520.5prime
CAGTCGACATGGACACCGCTGCCGCCGCCGCCGCTGCAGTCGCCGTTGAC
CTGAAACCCGATCAGCAGCTGCTGGGCAGCTCCACAAAGACCAGGATTGG
AGGAGGAAGCACTGGATGCGACTGCCTGGGCAGCACCGTGGAGACCATGT
CGCTGACTCCGCCACCCACGCCGCCTACACGCGCCATTGATGGCCAAGTG
GAAGCGTGTGGAGCTCCAGGCATCCCAAGTGCTCCCGCTGAGACCCATTC
CCTGAACGGAATGAAAGGCAAGGAGGCGCCGGAAACAGCAACCGCAATAG
CATCCACTGAACCCACTCAGCCGGATACTCCCGCCACATCATCCACGTCT
TCCGCCAAAGCTTCCACCACGCCAACGTCTGCCTTGCTGGGATCGGGATC
AGCAACAGGCTCGGTAGTCCCTGCAGCGGAGCATCCACCAGCTGCAGCTG
CATCGGTGCCTAGTAGCAGTGCCAGCAACTCCAGCAGCAGCAGCAGCAGT
TCCGGATCCGACGGGAATGTGGTCCAACTGCTGCCCTGGCAGGACATGCC
CACGTATCTTCAGTTCAACCCCTACGTACTCCGGGGTTACAGACCGCTTC
AGACCTTCAAAGGATGCCTCCTCAGCCTGTTCTACTGGCACAACGAGTCC
ATCAACATACTGACACATGCCATACCCATCTTCTACATCCTGGCCATCGT
GCCCGGACTGATGCCCTGGGACAGTGGCTACAAGTTCCTGTCCTTCTGCC
ACGTCTTCGGATCGGTGGCTCCCTGGTGCGGCAGCTTCGTCTACCACCTT
TTCATGAACATCGAGAAGGGCGAGAACGTCTACTACACGCTGCTCAAGTT
GGACATGGTCGGGATCTGGGTGAGCCAGAGCTTTGGTGCCCTGCCCCTGG
TCACAGCCACCACTCTGTGCTTCCCCCCGTGCTCAAGTGGCTCATTATTG
TTTCCTACTGCGGGCCTCCCTGGGGGGCTCTAAAGGCTCTTACTGCCAGC
TCACCCTGGCGACGTCGCTTGTGCTTCGCCTGCCTTCGCCATGCGCTCGA
TTCTGACCTTCCTGCGCATTCGTGGAATGGTGGGCGGCAGTCCATGGTCC
TTTCCATGTCTAACTGCAGAACGGCCTCTTCAAACTGG
FMO08520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33203-RD | 3228 | CG33203-RD | 487..1625 | 8..1138 | 5285 | 98.1 | Plus |
CG33203-RF | 3243 | CG33203-RF | 487..1606 | 8..1119 | 5250 | 98.4 | Plus |
CG33203-RE | 3243 | CG33203-RE | 487..1606 | 8..1119 | 5250 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28886256..28886917 | 669..8 | 3310 | 100 | Minus |
3R | 32079331 | 3R | 28875049..28875268 | 888..669 | 1085 | 99.5 | Minus |
3R | 32079331 | 3R | 28872520..28872659 | 1119..984 | 415 | 91.4 | Minus |
3R | 32079331 | 3R | 28872743..28872821 | 962..885 | 345 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 19:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6928 | 276..447 | 120 | 55.2 | Plus |
FMO08520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:38:15 Download gff for
FMO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33203-RB | 653..1796 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:30 Download gff for
FMO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33203-RD | 482..1625 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:14 Download gff for
FMO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33203-RD | 482..1625 | 1..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:14 Download gff for
FMO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28872520..28872657 | 986..1119 | 92 | <- | Minus |
3R | 28872717..28872820 | 886..985 | 93 | <- | Minus |
3R | 28875052..28875267 | 670..885 | 99 | <- | Minus |
3R | 28886256..28886922 | 1..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:30 Download gff for
FMO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24698439..24698542 | 886..985 | 93 | <- | Minus |
arm_3R | 24698242..24698379 | 986..1119 | 92 | <- | Minus |
arm_3R | 24700774..24700989 | 670..885 | 99 | <- | Minus |
arm_3R | 24711978..24712644 | 1..669 | 99 | | Minus |