FMO08521.5prime Sequence
1119 bp (984 high quality bases) assembled on 2010-06-10
> FMO08521.5prime
CAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGAAGCTGAAG
TACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAACATGCCGCA
GCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCACGGTGCCGC
CTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCATTCGGCGGT
GTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAGGATAGCGA
GGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCTGGACATGG
AGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGGGCAACTAC
AGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAGCTGCGCGC
CCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGCCATCGCCT
TGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTTTCCACGCT
AAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCCTGCATTCG
GGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGCTGGCTACA
AGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGCTGGCTGCC
CATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAGACAGACGA
GTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCAGCATCGCT
TGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAACGCCAGCGG
GATCAGAGGCGCGCACGTAAGGAGCAGGAAAAGCACAATGCCAGCTCTGG
TGGATCATCTGGAGATTTTCCCGTTGGGAATCCTGGTAACGGAAATATGT
CTGATATACTGGGCCGCCATGTCAGATCCCGAGGTGTCAGCCGCCATTCA
GGACATTTTGTCAAATCCGGGTACAATCACAAGTACCGCGTCGAACCCGA
GATATACACCTTATCAAGAGAATTGTGCCGGTGGAATGTGGTGCTGCCTT
GCCACGGTGAAAGCTGAAGCGACGAGCCTAACCTTAAGAATCGCGACTCG
TCATGACGGTTGACCAGCT
FMO08521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HIP-R-RD | 2006 | CG2947-RD | 64..1109 | 9..1050 | 4935 | 98.6 | Plus |
| HIP-R-RB | 2065 | CG2947-RB | 123..1168 | 9..1050 | 4935 | 98.6 | Plus |
| HIP-R-RA | 2085 | CG2947-RA | 143..1188 | 9..1050 | 4935 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3790755..3791403 | 303..952 | 3155 | 99.4 | Plus |
| X | 23542271 | X | 3799838..3800486 | 303..952 | 3155 | 99.4 | Plus |
| X | 23542271 | X | 3790164..3790336 | 9..181 | 865 | 100 | Plus |
| X | 23542271 | X | 3799247..3799419 | 9..181 | 865 | 100 | Plus |
| X | 23542271 | X | 3790416..3790541 | 181..306 | 630 | 100 | Plus |
| X | 23542271 | X | 3799499..3799624 | 181..306 | 630 | 100 | Plus |
| X | 23542271 | X | 3791475..3791556 | 950..1029 | 190 | 87.8 | Plus |
| X | 23542271 | X | 3800558..3800639 | 950..1029 | 190 | 87.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:31 has no hits.
FMO08521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:38:13 Download gff for
FMO08521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32789-RA | 91..1151 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:00 Download gff for
FMO08521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-R-RA | 134..1194 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:41 Download gff for
FMO08521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-R-RA | 134..1194 | 1..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:41 Download gff for
FMO08521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3790155..3790336 | 1..181 | 97 | -> | Plus |
| X | 3790417..3790538 | 182..303 | 100 | -> | Plus |
| X | 3790756..3791402 | 304..951 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:00 Download gff for
FMO08521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3684188..3684369 | 1..181 | 97 | -> | Plus |
| arm_X | 3684450..3684571 | 182..303 | 100 | -> | Plus |
| arm_X | 3684789..3685435 | 304..951 | 99 | -> | Plus |
