FMO08523.5prime Sequence
983 bp (983 high quality bases) assembled on 2010-06-10
> FMO08523.5prime
CAGTCGACATGTCCCAGATGGGCGGCACATGCTTGTACGATGAGCCCGAA
ATCATGGAGGAGTTCATCAGCTGTTATCAGTATTTCACCGCCCTGTGGGA
CAGCAGCAGTCCCGATTATCTATCGAAACAGAAAAAGGAGCCCGGCTATC
AGGAGCTATTGAAGATACTGCGACGCGTTAATAGCAACTGTTCGATTCAG
GATGTTAAGCGAAAGATAAACTCGCTGCGTTGCTGCTATCGTCGTGAATT
CAAAAAGGTACAGGAATCGGTCAATGGCTACCAGACGCGTCTCTGGTGGT
TTCATCTGATGGATTTCCTCAAGCCGGTACTCAACATACAATCGCCGGCC
AGGGTGAAATCCGAGAACGTGGACGATAGTCTCGACGAGACCAGCATTCA
GGATGTTGACATTATGTCTGATGCCTTTCCACACGAAGAGGATATGCTAC
GTCTTGATGCCGTGGGTGATGGCGATGTTGAACCGGAACCCGAGCCTGAT
AACGATCCCGAATTGGATAACATGGATGATCATGTTGATGATTATCGTAA
CAATTCATCGGCTGGGAGCATTAAGAACAATGGCTATCAGCAGCACACCG
TATCTTCGCACCAGCAGCATAACGGTGAATCGCAGACTTCGGATAAATCC
GGACGTCGCATCCGTAACCGACGAAGACGCAGTAGCAATGACACCGATTA
CGTTGAAGCGGCGAGAAAGCGTAGAAATGTGGAGACTTCGAATAGAGATA
GAGACTGGCATAGAGAGCGGGATAGGGAGCGAGACAGAAAGCATGAAAGC
GACAGCGAGTACGAGTGCGAGCTGATCGGAAAACGGATGGCCAGCCACTT
CCGGCGTATGCGTCCGGATCAGCGACTTTTCGCCGAACGGATCATCAGCG
AGGTGTTGGTCTATGGCCGAATGAATCGCCTTTCGTTCGAGACCCAATTT
AGTATGGGTCATAAAGCAAGCTTTCTAGAACAT
FMO08523.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RE | 2237 | CG4004-RE | 346..1302 | 9..965 | 4755 | 99.8 | Plus |
| CG4004-RD | 1985 | CG4004-RD | 94..1050 | 9..965 | 4755 | 99.8 | Plus |
| CG4004-RA | 3403 | CG4004-RA | 94..1050 | 9..965 | 4755 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12746864..12747432 | 397..965 | 2815 | 99.6 | Plus |
| X | 23542271 | X | 12744557..12744950 | 9..402 | 1970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:45 has no hits.
FMO08523.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:38:24 Download gff for
FMO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RA | 92..1052 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:47 Download gff for
FMO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RA | 94..1054 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:09 Download gff for
FMO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RA | 94..1054 | 9..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:09 Download gff for
FMO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12744557..12744949 | 9..401 | 100 | -> | Plus |
| X | 12746869..12747436 | 402..970 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:47 Download gff for
FMO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12638590..12638982 | 9..401 | 100 | -> | Plus |
| arm_X | 12640902..12641469 | 402..970 | 99 | | Plus |
