FMO08530.5prime Sequence
773 bp (773 high quality bases) assembled on 2010-06-10
> FMO08530.5prime
CAGTCGACATGAGCGCACCTGGCATGGACAAGAGAAAACTGTCGACATCT
GGCGACTCGCTTTACGAGATCTTAGGACTTCCGAAGACAGCCACCGGAGA
TGATATTAAAAAGACTTACCGGAAACTCGCACTCAAATACCATCCCGATA
AGAACCCGGACAATGTGGATGCGGCTGATAAGTTCAAGGAAGTCAACCGG
GCCCACTCGATATTGAGCGACCAGACGAAGCGCAACATATACGACAACTA
CGGCTCTTTGGGCTTGTACATAGCCGAGCAGTTTGGCGAGGAGAATGTCA
ACGCATACTTCGTGGTCACTTCACCGGCTGTAAAGGCGGTGGTTATCTGC
TGTGCCGTGATCACTGGATGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTG
CAACTTCTGCTGCGGCAAGTTCAAGCCGCCGGTCAACGAGTCGCACGATC
AGTATTCACATCTGAATCGCCCCGATGGCAATCGGGAGGGCAACGATATG
CCAACGCATCTGGGACAGCCGCCACGCCTTGAGGACGTTGACCTAGACGA
CGTTAACTTGGGTGCGGGCGGAGCCCCCGTTACCTCACAGCCGCGGGAAC
AGGCCGGAGGACAGCCTGTTTTCGCCATGCCGCCGCCCAGTGGAGCCGTG
GGAGTAAACCCCTTCACCGGCGCCCCTGTAGCAGCTAACGAGAATACGTC
GCTAAACACAACGGAGCAGACCACTTACACGCCAGATATGGTTAATCAAA
AATATGCAAGCTTTCTAGACCAT
FMO08530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csp-RF | 2028 | CG6395-RF | 372..1118 | 9..755 | 3735 | 100 | Plus |
| Csp-RB | 1842 | CG6395-RB | 186..932 | 9..755 | 3735 | 100 | Plus |
| Csp-RE | 2895 | CG6395-RE | 186..916 | 9..739 | 3640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22271558..22271766 | 531..739 | 1030 | 99.5 | Plus |
| 3L | 28110227 | 3L | 22269572..22269727 | 181..336 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 22269353..22269491 | 44..182 | 695 | 100 | Plus |
| 3L | 28110227 | 3L | 22269787..22269920 | 334..467 | 670 | 100 | Plus |
| 3L | 28110227 | 3L | 22270914..22270977 | 468..531 | 320 | 100 | Plus |
| 3L | 28110227 | 3L | 22267753..22267788 | 9..44 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:50 has no hits.
FMO08530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:32 Download gff for
FMO08530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csp-RB | 486..1239 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:20 Download gff for
FMO08530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csp-RB | 179..932 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:20 Download gff for
FMO08530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csp-RB | 179..932 | 1..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:20 Download gff for
FMO08530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22269353..22269491 | 44..182 | 100 | -> | Plus |
| 3L | 22269574..22269726 | 183..335 | 100 | -> | Plus |
| 3L | 22269789..22269920 | 336..467 | 100 | -> | Plus |
| 3L | 22270914..22270976 | 468..530 | 100 | -> | Plus |
| 3L | 22271558..22271762 | 531..735 | 100 | -> | Plus |
| 3L | 22272369..22272388 | 736..755 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:20 Download gff for
FMO08530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22262453..22262591 | 44..182 | 100 | -> | Plus |
| arm_3L | 22262674..22262826 | 183..335 | 100 | -> | Plus |
| arm_3L | 22262889..22263020 | 336..467 | 100 | -> | Plus |
| arm_3L | 22264014..22264076 | 468..530 | 100 | -> | Plus |
| arm_3L | 22264658..22264862 | 531..735 | 100 | -> | Plus |
| arm_3L | 22265469..22265488 | 736..755 | 100 | | Plus |
