FMO08531.5prime Sequence
1155 bp (1034 high quality bases) assembled on 2010-06-10
> FMO08531.5prime
CAGTCGACATGGCCAGTGGCAACAATGAAACTGAGCCGCTCTACTGCGGC
AGCGGCATGGATAATTTTCATACAAGCTACAAGAACATGCATGGCTATGT
TTCGCTGGTGGTCTGCATCCTGGGCACCATCGCGAATACCTTGAATATCA
TTGTGCTAACCCGACGGGAGATGCGCTCCCCCACGAATGCCATACTCACG
GGTCTGGCCGTGGCCGACCTGGCAGTTATGCTGGAGTATATACCCTACAC
CATACACGACTACATCCTGACGGACAGTTTGCCGCGGGAGGAGAAGCTCA
GCTACAGCTGGGCCTGCTTCATCAAGTTCCATTCGATTTTCGCCCAGGTT
CTGCACACCATTTCCATTTGGCTGACGGTGACCCTGGCTGTTTGGCGTTA
TATAGCGGTGGGTTATCCGCAAAAGAATCGCGTATGGTGCGGTATGAGAA
CCACCATAATAACGATAACCACCGCTTATGTGGTGTGTGTTCTGGTGGTG
TCGCCGTCGCTCTATTTGATCACGGCTATAACCGAATATGTCGATCAGTT
GGATATGAATGGCAAAGTGATAAACTCCATTCCCATGACCCAGTACGTAA
TCGATTATCGTAATGAGTTACTGAGTGCCAGGACGGCTGCCCTGAATGCC
ACGCCCACCAGTGCACCACTGAACGAAACTGTGTGGTTAAATGCGAGCAC
CTTGCTGACATCGACAACCACCGCTGCACCACCCACGCCATCGCCAGTGG
TGCGAAATGTTACTGTCTATAGGCTATACCACAGCGATTTGGCGTTGCAC
AATGCCTCGCTGCAAAATGCCACATTTCTCATATACAGTGTAGTGATTAA
GCTGATACCATGCATAGCACTCACCATTCTGTCGGTTCGATTGATCCTGA
CTTACTGGAGGCCAAGCGGCGGCGGAAGAGCTCACAGCAAGCCCGCCACT
CCGGGTGCCAGTAATGGAACCAAATCACCGGCCAATGGTAAAGCACCGAT
AAGCCCGGAAAAATAGCAAACTCTGGAAAAGAAAAGCGACGGATCGCACC
ACGAAATGCTGCTGGCGTGCTACTCTCTCTTCTCATCACTGAATTTCCCC
AGGGATTATGGTTGCTGATGCTTGGCTCGGAAATTCTTCTATCTGCAGCT
ACTAG
FMO08531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR1-RB | 3544 | CG8985-RB | 426..1580 | 9..1148 | 5250 | 97.9 | Plus |
| MsR1-RA | 3544 | CG8985-RA | 426..1580 | 9..1148 | 5250 | 97.9 | Plus |
| MsR2-RC | 2918 | CG43745-RC | 573..1041 | 34..502 | 1070 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2342646..2343693 | 75..1111 | 4575 | 98 | Plus |
| 3L | 28110227 | 3L | 2298178..2298578 | 102..502 | 1000 | 83.3 | Plus |
| 3L | 28110227 | 3L | 2338922..2338989 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:11 has no hits.
FMO08531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:29 Download gff for
FMO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DmsR-1-RA | 421..1585 | 1..1155 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:21 Download gff for
FMO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR1-RA | 421..1585 | 1..1155 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:04 Download gff for
FMO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR1-RA | 421..1585 | 1..1155 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:04 Download gff for
FMO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2338917..2338989 | 1..76 | 94 | -> | Plus |
| 3L | 2342648..2343739 | 77..1155 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:21 Download gff for
FMO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2338917..2338989 | 1..76 | 94 | -> | Plus |
| arm_3L | 2342648..2343739 | 77..1155 | 97 | | Plus |
