Clone FMO08532 Report

Search the DGRC for FMO08532

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:85
Well:32
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG40439-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08532.5prime Sequence

539 bp (539 high quality bases) assembled on 2010-06-10

> FMO08532.5prime
CAGTCGACATGAACACGTTAAAATACATTGATAATAAAGAAATAATAATT
GAGATTCTTCATTTGGCTATAGATTACCTGATTGGAAATTTTACTGACGA
ACAAACTCTTCGTTCGTCACACAAGTATGGATTTCAAAATTCAGACGACT
TTCTGTTGGTCATACGAATCGTGTCAAAGTTTTACAAGGATATTTTAGTA
AAATGCGAAAAACTAACTCAATTTTCGTGTATTAACCCTGAAATGAGCCG
GCATGCACATCTTGTGCTATCAGCACGCTATTCTGAGTTAAGAAGCCATC
TCGAGCATTGGGAGTTCTTGGAAAAAAAGAATGTCATAGAATCTTTTGGA
TGGGACACACGGCTAATATTAGGAGATAGCAGCTTTGGAAGGCATATACA
TCAACTAACAACTTTGGTTTTCCAATACCGTCACATGCATATTCAAAAAG
ACTTGCATTTTGAAATGAATAACGTAATGTTAAGCGACTTCATTTATTTA
TTAGAAAATTTATTAGCCAGGGCAAGCTTTCTAGACCAT

FMO08532.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG40439-RA 707 CG40439-RA 59..571 9..521 2565 100 Plus
CG40439-RB 688 CG40439-RB 59..552 9..521 2270 96.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 854966..855435 52..521 2350 100 Plus
2L 23513712 2L 22797655..22798124 521..52 2350 100 Minus
2R 25286936 2R 854872..854916 9..53 225 100 Plus
2L 23513712 2L 22798174..22798218 53..9 225 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:15:43 has no hits.

FMO08532.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:27 Download gff for FMO08532.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40439-RA 18..533 9..525 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:04 Download gff for FMO08532.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40439-RA 59..574 9..525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:41 Download gff for FMO08532.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40439-RA 59..574 9..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:41 Download gff for FMO08532.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22797652..22798122 54..525 99 <- Minus
2L 22798174..22798218 9..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:04 Download gff for FMO08532.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22690384..22690854 54..525 99 <- Minus
arm_2L 22690906..22690950 9..53 100   Minus