FMO08533.5prime Sequence
1004 bp (1004 high quality bases) assembled on 2010-06-10
> FMO08533.5prime
CAGTCGACATGGACTCCGACGCCGCACAAAAGACCTGGGAGCTGGAGAAC
AACATCCAGACGTTGCCCAGTTGTGACGAGATCTTTCGCTACGACGCCGA
ACAGCAGCGGCAGATCATCGATGCGAAGCCCTGGGAGAAAGATCCCCACT
TCTTTAAGGACATTAAGATCTCGGCTCTGGCGCTCCTAAAGATGGTGATG
CACGCTCGCTCTGGCGGTACTTTGGAGGTGATGGGTCTAATGCTTGGCAA
GGTAGAGGACAACACAATGATTGTCATGGATGCATTTGCACTGCCAGTGG
AGGGCACTGAAACCCGCGTCAATGCCCAGGCACAAGCGTACGAGTACATG
ACCGCCTACATGGAAGCGGCCAAAGAGGTGGGACGCATGGAACACGCCGT
GGGCTGGTATCACAGCCATCCCGGTTACGGTTGCTGGTTGTCCGGCATCG
ATGTGTCCACCCAGATGCTCAACCAGACATACCAGGAGCCATTCGTGGCC
ATTGTGGTTGATCCGGTGCGCACTGTTTCCGCTGGCAAGGTGTGTCTGGG
TGCATTCCGCACGTATCCAAAAGGTTATAAGCCACCAAACGAGGAGCCCT
CGGAGTATCAGACCATCCCGCTGAATAAGATCGAAGACTTTGGAGTCCAC
TGCAAGCAGTACTATCCCTTGGAAATTAGCTACTTCAAGTCTGCTCTGGA
CCGCAGGCTCCTCGACTCTCTGTGGAACAAATACTGGGTAAACACACTGG
GCAGCTCGGGTCTGCTCACCAACACAGAGTACACCACCGGTCAGATCATG
GATCTCTCCGAGAAGCTGGAGCAGAGTGAGAACTTTTTAGGTCGCGGAAC
CGATGTCAATGAGAAGCGTTCGGAGGATAAGCTGTCCAAGGCCACCCGAG
ACTGCAGCCGCTCCACCATTGAACTGATACACGGCTTGATGGCTCAGATT
GTTAAAGACAAACTTTTCACAGTCGGACTGGGCAAAGCAAGCTTTCTAGA
ACAT
FMO08533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN5-RA | 1196 | CG14884-RA | 81..1061 | 9..986 | 4825 | 99.6 | Plus |
| CSN5-RB | 1190 | CG14884-RB | 81..1055 | 9..986 | 4725 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16470492..16471070 | 269..847 | 2895 | 100 | Plus |
| 3R | 32079331 | 3R | 16470179..16470439 | 9..269 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 16471128..16471251 | 846..969 | 605 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:50 has no hits.
FMO08533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:26 Download gff for
FMO08533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 71..1064 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:10 Download gff for
FMO08533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 73..1066 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:56 Download gff for
FMO08533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 73..1066 | 1..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:56 Download gff for
FMO08533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16470171..16470439 | 1..269 | 98 | -> | Plus |
| 3R | 16470493..16471069 | 270..846 | 100 | -> | Plus |
| 3R | 16471129..16471276 | 847..994 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:10 Download gff for
FMO08533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12295893..12296161 | 1..269 | 98 | -> | Plus |
| arm_3R | 12296215..12296791 | 270..846 | 100 | -> | Plus |
| arm_3R | 12296851..12296998 | 847..994 | 94 | | Plus |
