FMO08534.5prime Sequence
1052 bp (984 high quality bases) assembled on 2010-06-10
> FMO08534.5prime
CAGTCGACATGTCCTCGACCGCCGGAAAGCGCAAGGAGATCTACAAATAT
CTCGCGCCATGGCCACTGTACTCCATGAACTGGAGTGTAAGGCCGGACAA
GCGATTCCGGCTCGCACTGGGCAGCTTCATCGAGGAGTACAACAACAAGG
TACAGATCATCAGCCTGGACGAGGACACCAGCGAATTTAGTGCTAAGAGC
ACCTTTGATCATCCATATCCGACAACCAAGATCATGTGGATCCCGGACTC
CAAGGGTGTCTATCCGGATCTGTTGGCCACCAGTGGCGACTACTTGCGGG
TGTGGCGTGCCGGGGAACCGGACACGCGGCTCGAGTGCGTACTGAATAAC
AACAAGAACAGCGACTTTTGCGCTCCCCTCACTTCGTTTGATTGGAACGA
GGTGGATCCCAATCTGGTGGGAACCTCATCGATAGACACAACCTGCACTA
TCTGGGGACTGGAGACCGGACAGCCGCACGCTCGCGTCTATGTGGCAGGA
CACGTGAAGACGCAATTGATTGCCCATGACAAGGAAGTATACGACATTGC
TTTTTCGCGGGCCGGCGGCGGTCGGGACATGTTTGCCTCGGTGGGAGCGG
ACGGGTCGGTGCGCATGTTTGATCTGCGGCACTTGGAGCACTCGACCATT
ATATATGAGGATCCTGCTCATACGGCGCTGCTGCGCTTGGCCTGGAACAA
ACAGGACCCGAACTACTTAGCCACCGTTGCCATGGACTCGTGCGAAGTAA
TAATTTTAGATGTTCGTGTTCCTTGTACACCCGTTGCAAGACTGAGCAAT
CACAGAGCGTGCGTCAACGGTATTGCGTGGGCGCCGCATAGTTCCTGTCA
CATCTGCACTGCCGGTGATGATCACCAAGCACTGATCTGGGATATACAAC
AAATGCCACGTGCAATCGAGGATCCAATTTTAGCTATACAGCTGCCGAGG
GCGAAGTCAATCAGATTCATGGGGGTGCCACACAGCCGACTGGATAGCCA
TTTGCTATAACAAGCGTTGCGAGATCCTGCGGGTCGCAAGCTTTCTATAA
CA
FMO08534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wap-RD | 3366 | CG14614-RD | 550..1578 | 9..1035 | 5020 | 99.4 | Plus |
| wap-RC | 3400 | CG14614-RC | 695..1723 | 9..1035 | 5020 | 99.4 | Plus |
| wap-RB | 3283 | CG14614-RB | 578..1606 | 9..1035 | 5020 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22453730..22454192 | 660..198 | 2315 | 100 | Minus |
| X | 23542271 | X | 22454394..22454584 | 199..9 | 955 | 100 | Minus |
| X | 23542271 | X | 22453491..22453674 | 841..658 | 920 | 100 | Minus |
| X | 23542271 | X | 22453233..22453430 | 1035..840 | 800 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:13 has no hits.
FMO08534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:38:11 Download gff for
FMO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14614-RA | 760..1802 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:36 Download gff for
FMO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14614-RC | 691..1733 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:30 Download gff for
FMO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wap-RB | 568..1610 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:30 Download gff for
FMO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22454394..22454589 | 1..199 | 97 | | Minus |
| X | 22453229..22453428 | 842..1040 | 96 | <- | Minus |
| X | 22453491..22453672 | 660..841 | 100 | <- | Minus |
| X | 22453731..22454190 | 200..659 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:36 Download gff for
FMO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21855065..21855264 | 842..1040 | 96 | <- | Minus |
| arm_X | 21855327..21855508 | 660..841 | 100 | <- | Minus |
| arm_X | 21855567..21856026 | 200..659 | 100 | <- | Minus |
| arm_X | 21856230..21856425 | 1..199 | 97 | | Minus |
