FMO08541.5prime Sequence
596 bp (596 high quality bases) assembled on 2010-06-10
> FMO08541.5prime
CAGTCGACATGGAATACAGCGGAGTGCGGTTACCCGGAATTTTTTGTCCG
GATGAAAGCATTGAGCAGTTTGCAAGACTTTACGGAAGTGATAATTTTAG
CAAAATGATGATAATAGCCACGACCAGTAGTCCTCCGAGGACTATGCAGG
CCACAACTCATTCACCTCCAGGAATGATGGGGGGGAATCCGTCCAGGTTT
CAAGGGAATGCATCAACAGCTCACGATCGAAATCTAAAAGTTAATCACCG
ATATGCTCATAATGTGCAGGCCCCATCCAATCCGCACCCGGTCATAATGG
GTCCGTCCAGGTTTCATGGAAATCTACCACCTATTCAGGATACATATTTA
AAAAGTAGTCCCCGAGATCAAGGATTTCATGCTTATGGGGCCGTGCATAG
AGGCTGTGGTGACCACTATAGTTATTCGGCAAATTTGCAGAACTCTAAAC
CTGAATATCCTACAAGGCCCGACCAATCGGGCACACAAAATCCGGGACAA
ATGTACTGCAATACTCAGCACTATCAGAATCTGAATTTTTATCATCCACC
TCCACCTGGACCCAGATTTCCCTGGCTTGCAAGCTTTCTAGACCAT
FMO08541.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31206-RA | 832 | CG31206-RA | 79..650 | 7..578 | 2860 | 100 | Plus |
| CG31206-RB | 856 | CG31206-RB | 79..674 | 7..578 | 2610 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20107118..20107332 | 578..364 | 1075 | 100 | Minus |
| 3R | 32079331 | 3R | 20107573..20107778 | 259..54 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 20107396..20107500 | 364..260 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 20107834..20107885 | 58..7 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:37 has no hits.
FMO08541.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:15 Download gff for
FMO08541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31206-RA | 110..691 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:03 Download gff for
FMO08541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31206-RA | 72..656 | 1..584 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:38 Download gff for
FMO08541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31206-RA | 72..656 | 1..584 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:38 Download gff for
FMO08541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20107112..20107331 | 365..584 | 98 | <- | Minus |
| 3R | 20107396..20107500 | 260..364 | 100 | <- | Minus |
| 3R | 20107573..20107778 | 54..259 | 100 | <- | Minus |
| 3R | 20107839..20107888 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:03 Download gff for
FMO08541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15933295..15933500 | 54..259 | 100 | <- | Minus |
| arm_3R | 15933561..15933610 | 1..53 | 92 | | Minus |
| arm_3R | 15932834..15933053 | 365..584 | 98 | <- | Minus |
| arm_3R | 15933118..15933222 | 260..364 | 100 | <- | Minus |
