FMO08542.5prime Sequence
845 bp (845 high quality bases) assembled on 2010-06-10
> FMO08542.5prime
CAGTCGACATGTCGGCAGTGGTTTTACTTATTTTGTTGGGTCTTTCGGGA
CTCGTATCCATAACAGCCATACGAATCAAGGGAAACTCAACGGATGGTCG
GTTTTACAAGGATCAACGGATCATCGGTGGTCAGGCAGCTGAGGATGGCT
TCGCTCCCTATCAGATATCCTTGCAGGGAATCTCCGGTGCCCACTCCTGT
GGTGGTGCCATAATAAACGAGACCTTCGTCCTGACAGCCGCTCACTGTGT
CGAAAATGCCTTTATTCCATGGCTGGTTGTCGTCACGGGCACTAATAAGT
ATAACCAACCAGGAGGCAGGTATTTCCTAAAAGCCATTCATATCCATTGT
AACTACGATAATCCGGAGATGCACAATGATATTGCCCTGTTGGAATTAGT
TGAGCCAATTGCTTGGGACGAGCGCACTCAGCCGATCCCGTTGCCCTTGG
TGCCCATGCAGCCGGGTGATGAAGTAATCCTCACTGGTTGGGGATCCACG
GTCCTCTGGGGCACCAGTCCCATCGATTTGCAGGTTCTATACCTTCAGTA
CGTTCCCCATCGCGAGTGCAAAGCCCTGCTGAGCAACGATGAAGATTGTG
ATGTGGGTCACATTTGCACTTTTTCGCGGCTGGGAGAAGGTGCCTGCCAT
GGAGATTCCGGTGGACCTCTGGTCAGCAATGGTTACCTGGTGGGACTGGT
CAACTGGGGATGGCCCTGCGCAACAGGAGTTCCGGACGTTCATGCCAGTG
TTTATTTCTATCGTGATTGGATACGCAATGTCATGAGTGGGAATTCAAAG
TGCACTGGGTTCAGCTCCAACCAATCCGCAAGCTTTCTAGACCAT
FMO08542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31269-RB | 937 | CG31269-RB | 6..824 | 9..827 | 4095 | 100 | Plus |
| CG31265-RA | 909 | CG31265-RA | 625..743 | 602..720 | 235 | 79.8 | Plus |
| CG5255-RA | 914 | CG5255-RA | 640..702 | 648..710 | 180 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17127131..17127857 | 9..735 | 3635 | 100 | Plus |
| 3R | 32079331 | 3R | 17127991..17128088 | 730..827 | 475 | 99 | Plus |
| 3R | 32079331 | 3R | 17128836..17128954 | 602..720 | 235 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:35 has no hits.
FMO08542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:13 Download gff for
FMO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31269-RB | 1..832 | 7..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:16 Download gff for
FMO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31269-RB | 1..832 | 7..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:14 Download gff for
FMO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31269-RB | 1..832 | 7..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:14 Download gff for
FMO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17127121..17127856 | 1..734 | 99 | -> | Plus |
| 3R | 17127996..17128096 | 735..835 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:16 Download gff for
FMO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12952843..12953578 | 1..734 | 99 | -> | Plus |
| arm_3R | 12953718..12953818 | 735..835 | 97 | | Plus |
