Clone FMO08543 Report

Search the DGRC for FMO08543

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:85
Well:43
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32440-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08543.5prime Sequence

281 bp (281 high quality bases) assembled on 2010-06-10

> FMO08543.5prime
CAGTCGACATGTCATCGCAGTTTCGTGAGAAGCGCGGATTAGCTAGCAGT
GCCAATAATGAACTGCCCACCATGGATCCCAACGAGAGTGACTTCGCTCT
GGAGCTGAAGCCAGCACCCAAACAGACCTGCATTCCGACGCACCAACGCC
AGAGATTGGCCAGCTCGGACACCAACGTCTATCAGCGTGAGAGCGTGTTT
GATATACCGGACAAGTCCTGGTCAGTCCTGTACTTTGGATCCGGCAAGGA
CAGTTCCTCGAAAGCAAGCTTTCTAGACCAT

FMO08543.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32440-RA 633 CG32440-RA 185..440 8..263 1280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21360363..21360530 8..175 840 100 Plus
3L 28110227 3L 21360949..21361036 176..263 440 100 Plus
Blast to na_te.dros performed 2014-11-28 22:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 2352..2482 132..255 115 58.8 Plus

FMO08543.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:11 Download gff for FMO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32440-RA 185..453 8..277 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:38 Download gff for FMO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32440-RA 185..453 8..277 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:37 Download gff for FMO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32440-RA 185..453 8..277 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:37 Download gff for FMO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21360363..21360530 8..175 100 -> Plus
3L 21360949..21361049 176..277 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:38 Download gff for FMO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21353463..21353630 8..175 100 -> Plus
arm_3L 21354049..21354149 176..277 95   Plus