FMO08544.5prime Sequence
851 bp (851 high quality bases) assembled on 2010-06-10
> FMO08544.5prime
CAGTCGACATGAATACCTACGACGAAGTCTTGGCAACAGTGCTGGACAAT
TTGCTGGCATCCAAGAACTGTGAGGTGGTCGACGACGTACTGCGTCAGTC
GATGCTGGAACTTTTGCGTGGCAAATTCCGTGAGATTGCACGTCAGACTA
CCAATTGGTCCAATCACGCTGGTCGCTGTGCACCCAGCTACTTCGATCTG
GAGCGCACCTTCATCCGGATGAACATCAAGGTGGGCGAGCTAAAGGCCAT
GTACGAGGGTCAACCGGATTCGTTGGTCTTGGTTGAGTGCAATGCACCGG
AGACACAAGACCAGGACTTCCACAGTGTGCCGCAACCCGTGCTGAGCTCC
ACAAAGGCCGTGGAATTGGCCTCCACCACGTATATTCCGGACCATTTGCC
ACCATTTCCAGGGGCGCACACCTATAAGAGTTCGACCATTGAGAAGGTTA
CGGATCGCAGCTATGTGGCCATGAGGAATCGCCATGCCGAGAATGAGCTG
AACACCCAAAACGCCTTAAATCAATACTACCTGAGGTGCAACCCCAATAT
ATCGCTGTTCGAAGAAACCCAACGCGATGGAAGTGGCCACGTTTTGGATC
TAGGTCCACCCAAGAAACTTCCTTATTCGGACGCCCTGATGCCAAGAAAT
CAGGTCTTTGATACGGACATCTATGCTCCCATCGAGGTGATAACCCACAA
AGCCCTCGACTGCCGTTACTTGGAGAAGCCCAAGTTGCACAGTTCACGCC
CATCCTCACGAAATTTCGAAGAGGAAGACGTGGAAATGGAGGAGCCCTGC
AGTCCAGGGGGACTAGGTATTGAAAAACCGAATGCAAGCTTTCTAGACCA
T
FMO08544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sa-RA | 956 | CG11308-RA | 43..867 | 9..833 | 4110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21405940..21406518 | 702..124 | 2895 | 100 | Minus |
| 3L | 28110227 | 3L | 21405514..21405646 | 833..701 | 650 | 99.2 | Minus |
| 3L | 28110227 | 3L | 21406582..21406696 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:49 has no hits.
FMO08544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:38:01 Download gff for
FMO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 1..828 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:06 Download gff for
FMO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 43..873 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:45 Download gff for
FMO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 43..873 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:45 Download gff for
FMO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21405508..21405644 | 703..840 | 97 | <- | Minus |
| 3L | 21405940..21406518 | 124..702 | 100 | <- | Minus |
| 3L | 21406582..21406696 | 9..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:06 Download gff for
FMO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21398608..21398744 | 703..840 | 97 | <- | Minus |
| arm_3L | 21399040..21399618 | 124..702 | 100 | <- | Minus |
| arm_3L | 21399682..21399796 | 9..123 | 100 | | Minus |
