FMO08546.5prime Sequence
539 bp (539 high quality bases) assembled on 2010-06-10
> FMO08546.5prime
CAGTCGACATGACCATTCTACTTCGTACTCCCAGAGCGGTGGAGCTTTGG
AAGTGGAGTAATGGCAATTACTCTCTATCAAGCAGGCTGATAGATGGGCA
GGTGGAGCAAATGGCTCTTAGTCAAGGAGGTGCTGGCATAGAGAGCGGAT
ATGTGGCGCTGATGGCTTCATCGCCAGCAGCAGAGATTCGGATTTACAGC
TTCGGCAGCCCAGACACGAGCAGCTTCCAACTGGACCAAGTCCTGGAGCT
CGAGGACTCCCAACAGTCGCGGGTAATGCGCTTTATGCACCTGCCCGAGT
CCGACGATCTACTGCTCTGTGTGTCCAACGTACTGCCGCAGCAACCGCTT
CGCATCTACCAGCACCGCGGAGCAGCGGGATTCCAGCAAATCCTCGGCGA
CAGCGCCTTGCCAAAGGCTCATGCCCTGGAGGTGCTCTATCTGCCCAGCC
ATAAGCTGCGACTGCTGTCCATGGCCACGGAGGAGTCGGTCTACTTGCTG
CAGCCACAGTTTACTACACTTGCAAGCTTTCTAGACCAT
FMO08546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| clos-RD | 5621 | CG42600-RD | 5053..5565 | 9..521 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9588009..9588337 | 521..193 | 1630 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9588391..9588581 | 199..9 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:46 has no hits.
FMO08546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:23 Download gff for
FMO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12928-RB | 217..746 | 1..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:18 Download gff for
FMO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clos-RD | 5045..5574 | 1..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:18 Download gff for
FMO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clos-RD | 5045..5574 | 1..532 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:18 Download gff for
FMO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9588000..9588330 | 200..532 | 98 | <- | Minus |
| 2R | 9588391..9588589 | 1..199 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:18 Download gff for
FMO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5475505..5475835 | 200..532 | 98 | <- | Minus |
| arm_2R | 5475896..5476094 | 1..199 | 98 | | Minus |
