FMO08548.5prime Sequence
1059 bp (974 high quality bases) assembled on 2010-06-10
> FMO08548.5prime
CAGTCGACATGGGACGTTTTCAACGCTATGAACTGGACTTGGCCCAGCTG
GCGATCTTCATGAGATTGGATCGTATTGCATTGGTCGATTTTGTGGCTGA
GACTTATCGAGTGAGAGCTGGGATCATGTTTCGGCAGCCACCTCTCTCGG
CAGTGGCCAATATATTCGCTATGCCCTTTGAGAACGATGTGTGGGTGTCC
ATTTTGATGCTACTGATCATCACGACCGTGGTCTTGGTTCTGGAACTCTT
CTTTTCGCCACACAACCACGACATGTCCTACATGGATACACTAAATTTTG
TTTGGGGTGCTATGTGCCAGCAGGGTTTCTACGTAGAGGTGCGGAACCGA
TCGGCGAGAATCATTGTCTTCACCACATTTGTTGCAGCTCTCTTCTTGTT
CACCTCGTTTTCGGCCAATATTGTGGCCCTGCTGCATAGTCCGTCGGATG
CTATCCAGTCATTGTCTGATCTGGGACAATCGCCTCTAGAAATCGGAGTT
CAGGACACGCAATATAATAAAATATACTTCACCGAGTCCACAGATCCCGT
AACGAAGAATCTTTACCACAAAAAGATCGCGTCCAAAGGTGAAAATATCT
ATATGCGCCCCTTGCTAGGAATGGAGAAAATGCGAACCGGCTTATTTGCA
TACCAGGTTGAACTCCAGGCTGGTTACCAAATCGTCAGCGACACCTTCAG
CGAGCCGGAAAAAGTGCGGATTAATGGAACTGGAGCCTTTTCAGCTGCCC
ATGCTAGCTATTCCAACAAGGAAAAACTTTCCTTACAAGGAGCTCATTCG
AAAGCAACTACGCTGGCAGCGAGAAGTAAGCTTGGTGAATCGCGAGGAGC
GAAAGTGGATTCCTCAGAAGCCCAAATGCGAGGCGGAGTTGGCGGATTTG
TCTCCATTGGCATTACAGAATGCCGGTATGCTTGGGATCTTTGGGTGTGG
AGCTGCTGTCAGTTTTGTCCTGTTTCTTTTCGAGTTATCTTCGACCCTTC
TACAAAGTTGTCCGATAATTAAAGCTATAAGAGAATTCACGCGCAGCTTT
CTAGACATT
FMO08548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14077-RB | 3077 | CG14077-RB | 1749..2781 | 8..1035 | 4825 | 98.3 | Plus |
| Ir75d-RC | 2312 | CG14076-RC | 984..2016 | 8..1035 | 4825 | 98.3 | Plus |
| CG6841-RB | 3382 | CG6841-RB | 2964..3198 | 1035..807 | 885 | 93.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18909024..18909821 | 806..8 | 3915 | 99.6 | Minus |
| 3L | 28110227 | 3L | 18908608..18908790 | 986..807 | 800 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:54 has no hits.
FMO08548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:20 Download gff for
FMO08548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14077-RB | 1743..2748 | 1..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:05 Download gff for
FMO08548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir75d-RC | 978..1983 | 1..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:15 Download gff for
FMO08548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir75d-RC | 978..1983 | 1..1005 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:15 Download gff for
FMO08548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18908586..18908790 | 807..1005 | 96 | <- | Minus |
| 3L | 18909024..18909825 | 1..806 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:05 Download gff for
FMO08548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18901686..18901890 | 807..1005 | 96 | <- | Minus |
| arm_3L | 18902124..18902925 | 1..806 | 99 | | Minus |
