FMO08561.5prime Sequence
662 bp (662 high quality bases) assembled on 2010-06-10
> FMO08561.5prime
CAGTCGACATGGAGGATAGCGGCATCGATAGCGAGGACAGACAATCCAAC
ATCTACGAGGATGGGGCTGCGGGACTCTTGAAAACGGCCAGCGGAGCACC
CAAACATATGTCAGATCTGGAGTTTGAGGTGGCATTCAGGGGTGCCGGCA
AGGTCTATGCCCCCACGACCATAGAAATCGATGAAGAGGAGGAAGCGACC
GCAGGAAGCGGTCGAGGCCACGAGCCACCCAACACCTGCCGCATACTGCA
GCGCAAACTGGAGCTGAAGGTCGAGCGGGCCCGGCGGAACTACACTCAGT
TTCAGGCGGAGCAGGCTACCAAGACGCAGTCGTCCACTCTGATACCAATC
AACCGTCTACCCATTCCTGGCGAGCCGGAACACAAGCCACTGGTGGACTA
CAAATCCGAGAGTAGCGACGAGGCCGAGGAGATCTCCTTCTTTCCGGCCC
AGCTGAAGCGGTCCAAGCGCCGCCAGCAGAACCACGAACTGACTGACACC
TTCAGCATACAGGAGATGACCATTGACTCGGATCTGGAGTCGGACGACAG
TGCTGGCACCCAGAACCTCGAGCTCCTGCTGCCCTCCATGAAGACGACCA
TTCTGGACAAGTTTAAGGGATGCTTCGGATGCTGGCGGCGCAGGGCAAGC
TTTCTAGACCAT
FMO08561.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31051-RA | 835 | CG31051-RA | 89..724 | 9..644 | 3180 | 100 | Plus |
| CG31051-RB | 853 | CG31051-RB | 89..742 | 9..644 | 2990 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28519659..28519991 | 644..312 | 1665 | 100 | Minus |
| 3R | 32079331 | 3R | 28520050..28520285 | 315..80 | 1180 | 100 | Minus |
| 3R | 32079331 | 3R | 28520356..28520427 | 80..9 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:10 has no hits.
FMO08561.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:37:26 Download gff for
FMO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31051-RA | 89..727 | 9..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:23 Download gff for
FMO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31051-RA | 89..727 | 9..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:07 Download gff for
FMO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31051-RA | 89..727 | 9..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:07 Download gff for
FMO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28519656..28519988 | 315..648 | 99 | <- | Minus |
| 3R | 28520051..28520284 | 81..314 | 100 | <- | Minus |
| 3R | 28520356..28520427 | 9..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:23 Download gff for
FMO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24345378..24345710 | 315..648 | 99 | <- | Minus |
| arm_3R | 24345773..24346006 | 81..314 | 100 | <- | Minus |
| arm_3R | 24346078..24346149 | 9..80 | 100 | | Minus |
