FMO08571.5prime Sequence
1030 bp (1030 high quality bases) assembled on 2010-06-10
> FMO08571.5prime
CAGTCGACATGATGAATAACATCTTGGTCTTAATAGGCTTCTCGAGTGTT
ATGCTCGTTGCTGGCTTAGATGATATGAACTGTTTTTCCCTGCAAAACGA
AATTTGTCCCAATGCCAACATTTCCTTTTGGCTATACACAAAAGAAAATC
AGGAGGGAACTAAGCTTTCAGTTTTTGAACTTAATCGTTTTGAATTTTAT
CACCACAAACCGCTCAAGGTTCTGATCCATGGATTCAACGGGCACCGCGA
TTTCAGTCCCAATACCCAGCTACGTCCGCTGTTCCTGACACAGGATTACA
ATTTGATATCCTTGGATTATCCAAAACTAGCCTATGAACCCTGCTATACG
GAAGCGGTGCACAATGCCAAATACGTAGCTCGCTGTACTGCTCAGTTGCT
ACGAGTACTCCTCGAGAGCGGATTGGTCAAAATTGAGGATCTGCACCTAA
TTGGCTTGGGCTTAGGTGCCCATGTCGCAGGCTTCATTGGGCAGTTTCTT
CCGGAACACAAGCTGGAGCATATTACAGCCCTCGATCCGGCAAAACCATT
TTACATGGTCAAGGATCCGGCTCTAAAGCTCGATCCCACTGATGCCAAGT
TCGTGGACGTCGTGCACACGGATGTCACGATGCTTGGCTTACTGGATGCA
GTGGGTCACGTGGACTTCTACTTGAACATGGGTGTATCACAGCCCAACTG
CGGACCCATTAATAAGATGGAGACTCATTTCTGCTACCATAACCGAGCAG
CAGACTATTATGCCGAGTCTATTTCGTCACCTTCTGGATTCTATGGCTTC
TACTGTCCCAATTTTAAAAGCTTCGCAAAGGGAATTTGCATTCCTGATAA
AATATAGAGCTGATGGGTTTTCACGTGGATCCGAAAGCCAGAGGCAGGTA
TTTTCTGGATACCAATAATGGTCCTCCTTATGCCAAGGGAGAGAACTTTA
CCTCATAAGCCGCCAACTAAAAGGTCGAACTTTCGTGACGATGATATATA
GAAAATTGATGGACGCAAGCTTTCTAGACA
FMO08571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14034-RC | 1139 | CG14034-RC | 29..1035 | 9..1010 | 4910 | 99.5 | Plus |
| CG14034-RB | 1116 | CG14034-RB | 29..1035 | 9..1010 | 4910 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5215705..5216282 | 717..140 | 2890 | 100 | Minus |
| 2L | 23513712 | 2L | 5215474..5215642 | 885..718 | 795 | 99.4 | Minus |
| 2L | 23513712 | 2L | 5216335..5216440 | 139..34 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 5215318..5215421 | 988..886 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:40 has no hits.
FMO08571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:37:31 Download gff for
FMO08571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14034-RB | 14..1030 | 1..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:27 Download gff for
FMO08571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14034-RB | 14..1030 | 1..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:17 Download gff for
FMO08571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14034-RB | 23..1039 | 1..1013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:17 Download gff for
FMO08571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5215298..5215421 | 886..1005 | 96 | <- | Minus |
| 2L | 5215474..5215642 | 718..885 | 99 | <- | Minus |
| 2L | 5215705..5216282 | 140..717 | 100 | <- | Minus |
| 2L | 5216335..5216437 | 37..139 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:27 Download gff for
FMO08571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5215298..5215421 | 886..1005 | 96 | <- | Minus |
| arm_2L | 5215474..5215642 | 718..885 | 99 | <- | Minus |
| arm_2L | 5215705..5216282 | 140..717 | 100 | <- | Minus |
| arm_2L | 5216335..5216437 | 37..139 | 100 | <- | Minus |
