FMO08574.5prime Sequence
1152 bp (1044 high quality bases) assembled on 2010-06-10
> FMO08574.5prime
CAGTCGACATGAAGTTAACAACCTGTCAAATTGCTAAAGTATTTCCGCTG
TTGACAGCCTTCTTCTTCCTCAATTCTCCCAGCGCAGCCTCATTATCCTT
CGGTTTGAGTCCCACCTTCGCCTCCGCCTCCGCCTCCAGCTCCTTGTCCT
CGTCATCGTCCTCGTCCTCCCACTTTCACTCAGAAAAACCCCTCCACTCG
GATGTACTCGTCCTGCGAGCGGCCAAGCCATCCAGGGCCATTGCAACAAG
CGCAGATGCGGCTACGCGGTCTGTGCCAGCGTCAGCGGCAGAAACAACAC
TTGGCAGCAAGTCAATTTGGCCGACAGCTATACAAACAAAAAGTCCACGT
AATGCGCGTGAAGCTGGACGTCACAAACGTCAAATGCAAAAGCCCGCAAT
CCAGCAGCAACCACTGCAGCAGCAGCAACAGCGCATTAATCCCCCGCAGC
AAAAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAAGTGCAACATCAGGCT
CAACGAGTGGGCGTTTTAATACCTCCTTCGCTGCACGTTGATTTGACGCA
TGTGCAACAGGGCTTTCAGAATTTCCTTGACTTTTTCCAACTGCATTTAT
TTAATGTCACCGTCGATTTTCTGCGTGATGTGGACTTAAGCGGCTTCATT
AAATTACTCGAGCTGCCCAAGTACACGAGCGTTATAAAGACTTTAAATGC
GGGCATTATGGTAGCCAGCCACGTGGACGTGGACCAAAATTCCACTATCT
ACATTGGCACGCCCAGCCAGCCACGTCAGCAACATCGGCTGCATTCAAAG
CAGGAGCAGGAGCCCCATCGTCATCATCATGAGGACTCCAAAGCAAAACA
GTTTCCAGCGGGCGAGGAGGAATCCCATTCATCGGGCGAGACCGAGGAAA
ATCATTGGAACGACGCCCGCATCTTCTCGGGTCACTGTCATCAGCTGGCG
GAGCAACTGGTCTCGATTTCAATAAGACCGTCGTCCTGTGGTCCTGTCCG
CGGAATGAAAAATCTCCAGCATTTCTTCCGTCATTCGAGCAATTTCCCTA
GCGGTACAAAGCATTTCCACCAGTGAACTGGTCGCAGGTGAATTCTAATT
GGCGCTGCCCACGGTTCATCGACTGCGAATAAAAGAACTCCTTGGGATGA
TC
FMO08574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34357-RB | 2287 | CG34357-RB | 698..1823 | 9..1126 | 5215 | 98.1 | Plus |
| CG34357-RD | 7216 | CG34357-RD | 698..1799 | 9..1104 | 5175 | 98.5 | Plus |
| CG34357-RC | 6633 | CG34357-RC | 698..1799 | 9..1104 | 5175 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4537805..4538429 | 633..9 | 3095 | 99.7 | Minus |
| 3R | 32079331 | 3R | 4534156..4534526 | 1002..633 | 1775 | 99.2 | Minus |
| 3R | 32079331 | 3R | 4523024..4523075 | 1072..1022 | 210 | 98.1 | Minus |
Blast to na_te.dros performed 2014-11-28 23:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 574..599 | 169..144 | 112 | 92.3 | Minus |
FMO08574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:37:10 Download gff for
FMO08574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34357-RB | 693..1803 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:41 Download gff for
FMO08574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34357-RB | 693..1803 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:56 Download gff for
FMO08574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34357-RB | 693..1803 | 1..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:56 Download gff for
FMO08574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4534149..4534525 | 634..1010 | 98 | <- | Minus |
| 3R | 4537805..4538434 | 1..633 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:41 Download gff for
FMO08574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 359871..360247 | 634..1010 | 98 | <- | Minus |
| arm_3R | 363527..364156 | 1..633 | 99 | | Minus |
