Clone FMO08577 Report

Search the DGRC for FMO08577

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:85
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG33093-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08577.5prime Sequence

990 bp (990 high quality bases) assembled on 2010-06-10

> FMO08577.5prime
CAGTCGACATGAAATCAGAAACTGAGACTCTGCTCTTGCAAAATGCTGTT
CCTATAATAGATTTAGAAAATACCATCGAGGACGTGGCGACAAATCTGAG
AGAGGCTTTATCTGAAAAGGGGTATGCTCTGCTAATAAACCACGGTATTT
CAAATGAGAAGATTAAAAAAGCTTGGAAGTATTTCGATGGCTTTGTCGAC
CTGACCGATGAAGTTAAATTGGCATTTGAGAGAAGCAAAGCTCCAGATGG
CGAAAATCATGGTTACGTGAGTCCAGGAATGGAGCGATTTGATGGCAGGA
CACCGGAGCTGCGCCATGCTTACAATATATGCAAGCTGCAGGATAAATTT
CTGCCTGAACAGCAGCTACCAGGATTTAGCAGGCACATTAACTCCTTAGT
CGATGACTTCAATGAATTGGGTAGGTTTATTCTTAAGGCTCTGGCAATTT
CATTGGATGCTCCACCTTCGTTCTTCACGGATAAACATTCGTTTATGCTG
TCCGACGATCGCTTTAATCTGACCACCCTACGGATGCTGTTTTACCCGCC
CGTGGAAGATCAGGATCATGGAAGAAGCTTCATACGATGTGGAGCCCATG
CCGACTACTGCACCTTTACTCTGTTGGCTCAAGATTCGGAGGGTGGATTG
GAGGTCAAACTGCGGGGCAGTGACAAGTGGGAGCGAGTGGGTCATCTGCC
ATGAGCACTCTTCATAAACTGCGGTGAAACCATGGCTATCTGGACAGATC
AGTTCTACCACGCTTTGCAACATAGAGTAGTGATTCCCGATCAGGTTGAT
ATTCGCCATCGAGGCCGGCACTCCATTGCCTATTTCTGTCATCCTGATAA
CTCTGCACTGATTAATCCAAAGATTTAAATATTACAACTAAGCAGACGAC
AAGTGACGTATACAAACGCATATGATATAACTATGGCTCTGGCAAAAAGG
CGCATTTGCCACATCATATTTCTGCAGCTTTCTAAAACAT

FMO08577.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG33093-RA 1055 CG33093-RA 40..999 9..967 4655 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22531071..22531678 767..160 3010 99.7 Minus
3R 32079331 3R 22531731..22531883 161..9 765 100 Minus
3R 32079331 3R 22530871..22531014 909..767 670 99.3 Minus
Blast to na_te.dros performed on 2014-11-28 23:27:40 has no hits.

FMO08577.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:37:04 Download gff for FMO08577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33093-RA 40..1009 9..978 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:31 Download gff for FMO08577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33093-RA 40..1009 9..978 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:49 Download gff for FMO08577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33093-RA 40..1009 9..978 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:49 Download gff for FMO08577.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22530871..22531013 768..909 99 <- Minus
3R 22531071..22531676 162..767 99 <- Minus
3R 22531731..22531883 9..161 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:31 Download gff for FMO08577.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18356593..18356735 768..909 99 <- Minus
arm_3R 18356793..18357398 162..767 99 <- Minus
arm_3R 18357453..18357605 9..161 100   Minus